BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04120.1 Length=1543 Score E Sequences producing significant alignments: (Bits) Value Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 2274 0.0 Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 1312 0.0 > Ahg477673 jgi|Araly1|477673|fgenesh2_kg.3__374__AT3G04120.1 Length=1429 Score = 2274 bits (1231), Expect = 0.0 Identities = 1372/1437 (95%), Gaps = 22/1437 (2%) Strand=Plus/Plus Query 1 CTCCACGTTCTTCTCTCTTTTAAATA-ACCTCTTCACGGAACCCTtctcactcacctatc 59 |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 1 CTCCACGTTCTTCTCTCTTTTAAATAGACC-CTTCACGG-ACCCTTCTCACTCACCTATC 58 Query 60 tcactctaaaatctctctctgccaatctcatcttcaacctctc-t-cta-actctcGTTT 116 ||||| ||||||||||||||| |||||||||||||||||||| | | | |||| ||||| Sbjct 59 TCACTGTAAAATCTCTCTCTGTGAATCTCATCTTCAACCTCTCTTAC-ACACTCGCGTTT 117 Query 117 TCGATTC-TACAATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATT 175 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 118 TCGATTCAAACAATGGCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATC 177 Query 176 GGTCGTTTGGTTGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAAC 235 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 178 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAAC 237 Query 236 GACCCCTTCATCACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGT 295 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 238 GACCCCTTCATCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGT 297 Query 296 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 357 Query 356 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 417 Query 416 GACTACGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTG 475 ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 418 GACTATGTTGTTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTG 477 Query 476 AAGGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTT 535 |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 478 AAGGGTGGGGCCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTT 537 Query 536 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGC 595 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 538 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGC 597 Query 596 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAG 655 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 598 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAA 657 Query 656 GGTCTTATGACTACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCA 715 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 658 GGTCTTATGACAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 717 Query 716 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 777 Query 776 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCTCTTAACGGAAAGTTGACTGGAATGTCT 835 |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 778 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCCCTTAACGGAAAGTTGACCGGCATGTCT 837 Query 836 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 897 Query 896 GCTACCTACGATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGA 955 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 898 GCTACCTATGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGA 957 Query 956 ATCCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCG 1015 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 958 ATTCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCG 1017 Query 1016 AGCATTTTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCA 1075 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1018 AGCATATTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCA 1077 Query 1076 TGGTACGACAACGAATGGGGTTACAGTTCCCGTGTGGTCGACTTGATCGTCCACATGTCA 1135 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 1078 TGGTACGACAACGAATGGGGTTACAGTTCTCGAGTGGTCGACTTGATCGTTCACATGTCA 1137 Query 1136 AAGGCCTAAGCTAAGAAGCAGATCTCGAATGAT-AGGGAGTGGAAAGTCATCTGTTCATC 1194 ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| Sbjct 1138 AAGGCCTAAGCTAAGAAGCAGATCTCGAACGACGAGG-AGTGGAAAGTCATCTGTTCATC 1196 Query 1195 CCCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAAC--ttt 1252 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1197 CTCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAACCCTTT 1256 Query 1253 tttttttttt--GGTTTTCTTAATTCTCATTCATGTGAGGTGATGGGAGTTTGTAGACCG 1310 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1257 TTTTTTTTTTTTGGTTTTCTTAATTCTCATTCATGTGAGTTGATGGGAGTTTGTAGACCG 1316 Query 1311 ATGTTTTACTGGAAGCCCTTT-GTTTTTGGCTTTTGATATATTGAGTTAACGTTATGGTT 1369 |||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 1317 GTGTTTTACTG-AAGCCCTTTCGTTTTTGGCTTTTGATATATTGAGTTA-C-TTATGGTT 1373 Query 1370 TT-CAATTTTGT-TCCACTTCTCTTTTTAACTATATACTAAATCAAATCTGAACGAA 1424 || || |||||| || |||||||||||| ||||||||||||||||||||||||||| Sbjct 1374 TTTCA-TTTTGTCTC-ACTTCTCTTTTTTTCTATATACTAAATCAAATCTGAACGAA 1428 > Ahg471499 jgi|Araly1|471499|fgenesh2_kg.1__1453__AT1G13440.1 Length=1361 Score = 1312 bits (710), Expect = 0.0 Identities = 920/1023 (90%), Gaps = 8/1023 (1%) Strand=Plus/Plus Query 127 AATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATTGGTCGTTTGGT 186 |||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| Sbjct 121 AATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGGT 180 Query 187 TGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAACGACCCCTTCAT 246 ||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| Sbjct 181 TGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAACGATCCTTTCAT 240 Query 247 CACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCAATGGAAACA 306 ||| || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || Sbjct 241 CACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGCA 300 Query 307 CAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTGT 366 | ||||||| ||| |||||||||| || || ||||||||||||||||||||||||||||| Sbjct 301 CCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTGT 360 Query 367 TTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTACGTTGT 426 |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| Sbjct 361 TTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTGT 420 Query 427 TGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTGAAGGGTGGTGC 486 ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 421 TGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTGAAGGGTGGTGC 480 Query 487 CAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTTGTTGGTGTCAA 546 || |||||||| |||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 481 TAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTCGTTGGTGTCAA 540 Query 547 CGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGCACCACTAACTG 606 ||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| Sbjct 541 TGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGCACCACTAACTG 600 Query 607 CCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAGGGTCTTATGAC 666 ||||||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct 601 CCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAGGGACTCATGAC 660 Query 667 TACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCAATGAAGGACTG 726 || |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 661 CACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACTG 720 Query 727 GAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGGC 786 ||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 721 GAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGGC 780 Query 787 TGTCGG-AAAGGTGCTT-CCAGCTCTTAACGGAAAGTTGACTGGAATGTCTTTCCGTGTC 844 ||| || |||| || || ||| | || || ||||| ||||||||||||||||||||||| Sbjct 781 TGTTGGCAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACTGGAATGTCTTTCCGTGTT 838 Query 845 CCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTAC 904 |||||||||||||||||||||||||| || || || ||||| ||||||||||| || ||| Sbjct 839 CCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATAC 898 Query 905 GATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGAATCCTTGG- 963 ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||| Sbjct 899 GATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGAATT-TTGGG 957 Query 964 ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCGAGCATTTT 1023 ||||||||||||||||||||| || |||||||| || || ||||||||||| ||||| || Sbjct 958 ATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCAAGCATATT 1017 Query 1024 TGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCATGGTACGA 1083 || || ||||| || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1018 CGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTACGA 1077 Query 1084 CAACGAATGGGGTTACAGTTCCCGTGTGGTCGAC-TTGATCGTCCACATGTCAAAGGCCT 1142 |||||| |||||||||||||| ||||| |||||| || ||||| |||||||||||||||| Sbjct 1078 CAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTT-ATCGTTCACATGTCAAAGGCCT 1136 Query 1143 AAG 1145 ||| Sbjct 1137 AAG 1139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57782901665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5