BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04210.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477682 jgi|Araly1|477682|fgenesh2_kg.3__383__AT3G04210.1 1164 0.0
Ahg893040 jgi|Araly1|893040|Al_scaffold_0006_1036 579 3e-164
Ahg889979 jgi|Araly1|889979|Al_scaffold_0007_1965 154 2e-36
> Ahg477682 jgi|Araly1|477682|fgenesh2_kg.3__383__AT3G04210.1
Length=1447
Score = 1164 bits (630), Expect = 0.0
Identities = 879/996 (88%), Gaps = 29/996 (3%)
Strand=Plus/Plus
Query 781 CTTAGTTGGGATGGAGGATCATATGAAAAAATTGGAACGAATGTTATACCTAGATCTGAA 840
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||
Sbjct 470 CTTAGTTGGGATGGAGGCTCATATGAAAAAGTTGGAACTAATGTTATACCTAGATTTGAA 529
Query 841 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACTTCCATCGCCAG 900
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 530 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACCAGCATCGCCAG 589
Query 901 AGTTTTATTTCGAAAACATTCTGACAGTTTCGATTTGAGTGTCTTTATGGAGACTGTC-A 959
|||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |||| |
Sbjct 590 AGTTTTATTTAGCAAACACTCTGACAGTTTCGACTTGAGTGTCTTTATGGAGAATGTCAA 649
Query 960 AGG--GTTATACAAGACCAGGTTGTTCGGATGAACACGGTCTTAAGCTGCACTTACAGCA 1017
||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 650 AGGACGATATACAAGACCAGGTTGTGCGGATGAACACAGTCTTAAGCTGCACTTACATCA 709
Query 1018 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATGTAGAAGTTCCTCACTTAGGAGTTGT 1077
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 710 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATATAGAAGTTCCTCACTTAGGTGTTAT 769
Query 1078 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTGCTTGATGACGTTGATCAGTCAGC 1137
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 770 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTCCTTGATGACGTCGATCAGCCAGC 829
Query 1138 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATCAT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATTGT 889
Query 1198 CACCACGCAAGATCGAAGACTTTTGAAAGCACATGGAATCAAAGATGTGTACAAGGTGGA 1257
|||||| |||| ||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 890 CACCACTCAAGGTCGAAGACTTTTGGAAGGACATGGAATCAAAGATATGTACAAGGTGGA 949
Query 1258 TTTACCACCACCT-GATGATGCTTTTCAAATCTTCTGCATGTATGCTTTTGGTAAAACCT 1316
||| ||||||||| | ||| ||||||||||||||||||||| ||||||||||| || |||
Sbjct 950 TTTTCCACCACCTCG-TGAAGCTTTTCAAATCTTCTGCATGGATGCTTTTGGTCAAGCCT 1008
Query 1317 CTCCAAAACATGGTTTCGAGGAGCTTGCATGGGAAGCTACATACCTTTCTGGTATACACC 1376
|||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1009 CTCCTAAACACGGTTTCGAGGAGCTTGCATGGGAAGCTACATACGTGTCTGGTATACACC 1068
Query 1377 CTTCGGGAATAAAAAGTATGGGCTCTTATTTCCGGAAAATGTCAAAACCGGAGTGGGTAA 1436
||||||| |||| ||||||||| |||||||||||| ||||||||| | |||||||| |
Sbjct 1069 CTTCGGGTATAAGAAGTATGGGTTCTTATTTCCGGGGAATGTCAAAGCTGGAGTGGGCAG 1128
Query 1437 ACGCGTTACAAAGGTTAAGGACTAGTAAGCTTGACTCTGAATCTCCGAGGACCCACAGAA 1496
|||| |||| |||||||||||||| ||| | |||||||| ||| ||||||| ||| ||
Sbjct 1129 ACGCATTACTAAGGTTAAGGACTAATAACCCTGACTCTGGTTCTGTGAGGACCTACAAAA 1188
Query 1497 A-GCTCATAAAT-AGATTAAGGAATGTAAAACAGAAGAT-GCTGTCAAATACGTTGAGC- 1552
| | || || | ||| | || |||| |||||||||||| | ||||| || | |||||
Sbjct 1189 AAG-TCGGAA-TCAGAATCAGAAATGAAAAACAGAAGATTG-TGTCACGTATGATGAGCT 1245
Query 1553 CGTATAAGGAAGCACCAAATAGCATCAGCAGCAGCAAA-AGCTGCTAGTGTTTATGAAAC 1611
| ||||||| | | ||||||||| |||||| || ||| ||||||||||||||||||||
Sbjct 1246 CA-ATAAGGAGGAAACAAATAGCAGCAGCAGAAG-AAAGAGCTGCTAGTGTTTATGAAAG 1303
Query 1612 AAGTATAAAAGAAGAGGTGGATTCGTC-CGCGGAGTCGT-TGAATCATTGACTTGGTGAA 1669
|| ||| ||||| | | ||||||| || | | | ||||| | | || |||||| ||||
Sbjct 1304 AACTATGAAAGA-G-G-TGGATTCTTCTC-CTGTGTCGTCT-ACTCGGGGACTTGCTGAA 1358
Query 1670 GAAGTAAAGAAACTGATAGAGTTGAAGAACCACGTCCAAGAACATGAAACTACCTGATCA 1729
||| | ||||||||||||||||||||||||| || ||| ||||||||| | ||||||
Sbjct 1359 GAA--A--GAAACTGATAGAGTTGAAGAACCACTTCGAAGGACATGAAAC--C-TGATCA 1411
Query 1730 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1765
||||||||||||||||||||||||||||||||||||
Sbjct 1412 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1447
Score = 623 bits (337), Expect = 2e-177
Identities = 428/470 (91%), Gaps = 14/470 (3%)
Strand=Plus/Plus
Query 9 TTGCTTCATATAGCTCTCTAAAAAAGCTCTTTGTTCGTCTCTATATCATACGAATAATGG 68
|||||||| ||||||||||||| || |||||||| | |||||||| ||||||||||||||
Sbjct 1 TTGCTTCACATAGCTCTCTAAACAATCTCTTTGTCCCTCTCTATACCATACGAATAATGG 60
Query 69 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 120
Query 129 GAACAATATCTTTTATGGTTTATAGAAAATTCAGGTTACACCAAGAGAAGAACAACATAT 188
||| ||||||||||||||||||||||||||||||| || | ||| ||||| || | ||
Sbjct 121 GAATGCTATCTTTTATGGTTTATAGAAAATTCAGGTTCCATCTAGACAAGAA-AA-ACAT 178
Query 189 CATCTTGtttttctttttcatc--tt---gcttt-tc-t-tt-ttcatcttc-ttcATCG 238
| ||||||||||||||||||| || |||| || | || |||||| || ||||||
Sbjct 179 -AGCTTGTTTTTCTTTTTCATCTTTTACATCTTTCTCATCTTGTTCATC-TCTTTCATCA 236
Query 239 ACTTCGTCGCCCGGTCGTAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 298
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACTTCGTCTCCCAGTCGGAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 296
Query 299 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGGAATCGACATATTCATT 358
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGCAATCGACATATTCATT 356
Query 359 GATAAAGATATCAAGAGGGGTAAGTCCATCGGTCCTGAGCTCACAGAAGCTATCAGAGGA 418
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 357 GATAAAGATATCAAGAGGAGTAAGTCCATCGGTCCTGAGCTCATAGAAGCTATCAAAGGA 416
Query 419 TCGAGGGTTGCGATTGTCTTCCTCTCGAGGAAATATGCTTCTTCGTCGTG 468
|||||| |||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 417 TCGAGGATTGCAATTGTCTTCCTCTCGAGGAACTATGCTTCTTCTTCGTG 466
> Ahg893040 jgi|Araly1|893040|Al_scaffold_0006_1036
Length=2970
Score = 579 bits (313), Expect = 3e-164
Identities = 915/1194 (77%), Gaps = 87/1194 (7%)
Strand=Plus/Plus
Query 325 GGAG-TTCAAAAGCAA-GGGAATCGACAT--ATTCATTGATAAAGATATC--AAGAGGGG 378
|||| ||| |||| || ||||||| || | |||||||||||| || ||| ||||||||
Sbjct 3 GGAGTTTC-AAAG-AATGGGAATC-AC-TCCATTCATTGATAATGAGATCAAAAGAGGGG 58
Query 379 TAAGTCCATCGGTCCTGAGCTCA--CAGAAGCTATCAGAGGATCGAGGGT-TGCGA-TTG 434
|| ||||||||||||||||||| | | || || |||| ||| ||| | | | | ||
Sbjct 59 -AA-TCCATCGGTCCTGAGCTCATTC-G-TGCCATTAGAGAATCTAGGATCT-C-AGTTA 112
Query 435 TCTTCCTCTCGAGGAAATATGCTTCTTCGTCGTGGTG-CCTGAATGAGTTGGCACTGATC 493
| || ||||| | ||| || |||||||| |||||| | || | || ||| |||
Sbjct 113 TTTTGCTCTCTAAGAATTACGCTTCTTCAAAGTGGTGTCTTG-ACGAACTGGTGGAGATT 171
Query 494 ATGAAGTGCAGAAAAGAGTTGGGTCTAACAGTGA-TGACCCTTTTCTATGACTTGGACCC 552
|||||||||||| |||||||||||| ||| || | || || |||||||| | | || ||
Sbjct 172 ATGAAGTGCAGAGAAGAGTTGGGTCAAACTGT-AGTGGCCATTTTCTATAAAGTAGATCC 230
Query 553 AACTGATGTAAGGAAGCAGACCGGAGATTTTGGG-ATGGCCTTCA-AAGAAACTTGTAAA 610
| |||| |||| ||||| || |||| |||||||| | | || | || |||| |||
Sbjct 231 ATCTGACGTAAAGAAGCTGATCGGAAATTTTGGGCA-AGTATTTAGAA-AAACGTGTGCT 288
Query 611 GGTAAAACAAAGGATGAAATTGGAAGATGGAGACATGCTTTGG-AGGAAGTCGCCAAAAT 669
|||||||||||||| || ||||||||||||||||| ||| ||| | |||| || | |||
Sbjct 289 GGTAAAACAAAGGAAGACATTGGAAGATGGAGACAAGCTCTGGCA-AAAGTGGCTACAAT 347
Query 670 CGCCGGTTACCATTCAAGCATA-TGGGATAATGAAGCGGACATGATC-GGAATAGTCACC 727
||| ||||| |||||||||| | |||||||||||||||| ||||||| ||| | ||
Sbjct 348 CGCTGGTTATCATTCAAGCA-ACTGGGATAATGAAGCGGCCATGATCAAGAA-AATCGTA 405
Query 728 ACTGATATTTCAAATACGTTGAA-CATCTCAACGCCGTCAAGTGATTTCAG-CGACTTAG 785
|||||||||||||| | |||||| || || | | |||||||||||| | | ||||
Sbjct 406 ACTGATATTTCAAACATGTTGAATAAT-TCCATATCATCAAGTGATTTC-GATGGGTTAG 463
Query 786 TTGGGATGGAG-GATCATAT-GAAAAAATTGGAACGAATGTTATACCTAGA-TCTGAATG 842
|||| || ||| | |||| | ||||| | |||||| | |||||| |||||| || | |||
Sbjct 464 TTGGTAT-GAGAGCTCATTTCGAAAAGA-TGGAACCATTGTTATGCCTAGAGTCAG-ATG 520
Query 843 ATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACTTCCATCGCCAGAG 902
| ||||||||||| |||||||||||||||||||||||||| ||||| | || |||||||
Sbjct 521 AAGTGAGGATGATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATTGCCAGAG 580
Query 903 TTTTATTTCGAAAAC-ATTCT--GACAG-TTTCGATTTGAGTGTCTTTATGGAGACTGTC 958
|| || | | || | ||||| |||| |||| | ||| |||||||| |||| | | ||
Sbjct 581 TTGTA-TAC--AACCAATTCTCCAACAGTTTTC-AATTGGGTGTCTTTCTGGACAATATC 636
Query 959 -AAG--GGTTATACAAGACCAGGTTGTTCGGATGAAC-AC-GGTCTTAAGCTGCACTTAC 1013
||| ||||||||||| |||||| |||| || || | || ||| | || || |
Sbjct 637 AAAGCAAACTATACAAGACC---TTGTTCCGATG-ACTACAGCTC-AAAGTTACAATTGC 691
Query 1014 AGCAGCAGTTTCTGTCTCAAATATTCAACCAGAAGGATGTAGAAG-TTCCTCACTTAGGA 1072
| | || ||| ||||||||||| ||||||| |||||| | | || || ||| ||||||
Sbjct 692 AAAAACACTTTATGTCTCAAATAATCAACCATAAGGATAT-GGAGATTTTTCATTTAGGA 750
Query 1073 GTTGTACAAGACAGGTT-AAGAGACAAGAGAGTGCTTGTTGTGCTTGATGACGTTGATC- 1130
|||| ||||| ||||| || |||||||| ||| ||||| || ||||||| ||| || |
Sbjct 751 GTTGCCCAAGATAGGTTGAA-AGACAAGAAAGTTCTTGTCGTTCTTGATGGCGTGGA-CA 808
Query 1131 AGTCAGCACAATTAGAAGCCATGGCCAAGGAAAATAAG-TGGTTTGGTCCTGGAAGTCGG 1189
|||||| |||| |||| || |||| || |||| | | |||||||||||||| |||||
Sbjct 809 AGTCAGTACAACTAGATGCGATGGTGAAAGAAACT-TGTTGGTTTGGTCCTGGGAGTCGA 867
Query 1190 ATTATCATCACCACGCAAGATCGA-AGACTTTTGAAAGCACATGGAATCAA--AGATGTG 1246
|||||| | || || ||||||| | || ||||| | ||||||||| || || | || |
Sbjct 868 ATTATCGTGACAACACAAGATC-ATAGGCTTTTTAGAGCACATGGGATTAACCACAT-T- 924
Query 1247 TACAAGGTGGATTTACCACCACCTGATGATGCTTTTCAAATCTTCTGCATGTATGCTTTT 1306
|||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 925 TACAAGGTGGATTTTCCACCAGCTGATGAGGCTCTTCAAATCTTCTGCATGTATGCTTTT 984
Query 1307 GGTAA-AACCTCTCCAAAACATGGTTTCGAGGAGCTTGCATGGGAAGCTACATACCTTT- 1364
||| | || || || ||| ||||||| ||||||||||| ||||||| |||| || |||
Sbjct 985 GGTCAGAAG-TCCCCTAAAGATGGTTTTGAGGAGCTTGCTTGGGAAGTTACA-ACATTTG 1042
Query 1365 CTGGTATACACCCTTCGGGAATAAAAAGTA-TGGGCTCTTATTTCCGGAAAATGTCAAAA 1423
| |||| || |||| ||| ||| || ||||||| |||||||| |||||| ||
Sbjct 1043 CGGGTAAACTTCCTTTGGGGCTAAGG-GTTCTGGGCTCCCATTTCCGGGGAATGTCGAAG 1101
Query 1424 CCGGAGTGGGTAAACG-CGTTACAAAGGTTAAGGACTAGTAAGCTTGACTCTGA 1476
| ||||||| |||| | | ||| |||||||| |||||| |||||| ||||
Sbjct 1102 CAGGAGTGGATAAA-GTCACTACCAAGGTTAAAAACTAGT---CTTGACACTGA 1151
> Ahg889979 jgi|Araly1|889979|Al_scaffold_0007_1965
Length=1731
Score = 154 bits (83), Expect = 2e-36
Identities = 217/282 (77%), Gaps = 8/282 (3%)
Strand=Plus/Plus
Query 1184 AGTCGGATTATCATCACCACGCAAGATCGAAGACTTTTGAAAGCACATGGAATCAAAGAT 1243
||||| ||||||||||| || |||||| ||| ||| |||| || ||||| || || ||
Sbjct 970 AGTCGCATTATCATCACAACACAAGATAAAAGGCTTCTGAATGCTCATGGGATTAACCAT 1029
Query 1244 GTGTACAAGGTGGATTTAC-CACCACCTGATGATGCTTTTCAAATCTTCTGCATGTATGC 1302
| || |||||| |||| |||| || || ||| ||||||||||||||||||||||
Sbjct 1030 ATTTATGAGGTGG-GTTACTCACCTGAAGAAGAGGCTCTTCAAATCTTCTGCATGTATGC 1088
Query 1303 TTTTGGTAAAACCTCTCCAAAACATGGTTTCGAGGAGCTTGCATGGGAAGCTAC-ATACC 1361
||||||| ||| |||||| | ||||||| ||| | ||||| ||||||| ||| | ||
Sbjct 1089 TTTTGGTCAAATGTCTCCATATGATGGTTTTGAGAATCTTGCTTGGGAAGTTACGAAAC- 1147
Query 1362 TTTCTGGTATACACCCTTCGGGAATAAAAAGTA-TGGGCTCTTATTTCCG-GAAAATGTC 1419
|||| |||| || ||||| |||| ||| ||| |||| ||||||||| | | || ||||
Sbjct 1148 TTTCGGGTAAACTCCCTTTGGGACTAAGG-GTAATGGGATCTTATTTCAGAGGAA-TGTC 1205
Query 1420 AAAACCGGAGTGGGTAAACGCGTTACAAAGGTTAAGGACTAG 1461
|| | ||||||| ||| | ||| |||||||||||||||
Sbjct 1206 TAAGCATGAGTGGGAAAAGGAACTACCAAGGTTAAGGACTAG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5