BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G04460.1

Length=1723
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927989 jgi|Araly1|927989|scaffold_300446.1                       1958    0.0  


> Ahg927989 jgi|Araly1|927989|scaffold_300446.1
Length=1222

 Score = 1958 bits (1060),  Expect = 0.0
 Identities = 1166/1218 (96%), Gaps = 4/1218 (0%)
 Strand=Plus/Plus

Query  144   GGAGGAGGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG  203
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  7     GGAGGAAGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG  66

Query  204   AGATGGCTGCTGCTCAGCAACTTCCTGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG  263
             |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  67    AGATGGCTGCTGCTCAGCAACTCCCGGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG  126

Query  264   GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGACTATGAGGATGAATTCT  323
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  127   GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGATTATGAGGATGAATTCT  186

Query  324   TTGCTGCTCTGATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGGTTCCTTTG  383
             |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  187   TTGCTGCTCTCATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGCTTCCTTTG  246

Query  384   CTGAATCATTGTATGGTTTAAGGAGGAAATCAGCGAGATTGAGATTGAGGAAAGACAGTG  443
             ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct  247   CTGAATCATTGTATGGTTTGAGGAGGAAATCGGTGAGATTGAGATTGAGGAAAGACAGTG  306

Query  444   CCAGGAAGGATTCTAGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGTCAGAGAATCC  503
              ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  307   TCAGGAAGGATTCCGGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGCCAGAGAATCC  366

Query  504   TTTCTGTTGTGTTTCTGGTTGTGTTACCGTATTTCAAGTCAAAATTGCATGCTATATATA  563
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct  367   TTTCTGTTGTGTTTCTGGTTGTATTACCGTATTTCAAGTCAAAATTGCATGCTATCTATA  426

Query  564   ATAAAGAAAGAGAGGCTAGGCTCCGGGAAAGTTTATGGGGTGCAGAGGATCAAGGATTTG  623
             ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct  427   ATAAAGAAAGAGAAGCTAGGCTCCGGGAAAGTTTATGGGGAGCAGAGGATCCAGGATTTG  486

Query  624   ATGAAGCTGACTTCTTCACAGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG  683
             |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  487   ATGAAGCTGACTTCTTTACTGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG  546

Query  684   AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATTAAAAAGTTTATAGCTGTCTGCT  743
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  547   AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATAAAAAAGTTTATAGCTGTCTGCT  606

Query  744   ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC  803
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  607   ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC  666

Query  804   TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTAGAG  863
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  667   TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTCGAG  726

Query  864   CTACAGGGCAAGAACTGATGGATACATCCTCAAGGATTTCAAAGATTCGGAATCATGAGC  923
             |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct  727   CTACAGGGCAAGAACTGATGGATACATCATCAAGAATTTCAAAGATACGGAATCATGAGC  786

Query  924   GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACGGTGCAAGGGGCACTTCTTAGCTGCT  983
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  787   GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACAGTGCAAGGGGCACTTCTTAGCTGCT  846

Query  984   CATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAAA  1043
             ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct  847   CATATGCTGTGCTTGACTACGCCCAAACCGGTCTGATTGCAGCAGTTTTTATCTTTAAAA  906

Query  1044  TGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTC  1103
             |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct  907   TGATGGAATGGTGGTATCAATCAGCTGAAGAAAGATTATTAGCTCCAACAGTGTACCCTC  966

Query  1104  CACCTCCACCTCCTCCAGCCCCAAAGATGGCCAAAGAAGGAATCCCTCTACCTCC-AGAC  1162
             ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||
Sbjct  967   CACCTCCACCTCCTCCAGCCCCAAAGATGGCGATAGAAGGAATCCCTCTACCTCCCA-AC  1025

Query  1163  AGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCT  1222
             ||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct  1026  AGATCCCTCTGCGCGTTATGCTTGCAAACACGTGCAAACCCATCAGTTGTCACAGTCTCT  1085

Query  1223  GGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG  1282
             ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  1086  GGATTTGTTTTCTGCTACTCATGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG  1145

Query  1283  GTGACATTGATTCCAGCCAGCGTTGA-TCAGATTAGGAGGTTGTTTCAGGACACTTAGGA  1341
             |||||||||||||| ||||| || || ||||||||||||||||||||| ||||||||  |
Sbjct  1146  GTGACATTGATTCCGGCCAGTGT-GAATCAGATTAGGAGGTTGTTTCATGACACTTAATA  1204

Query  1342  CCAGTCTATTTAATGGTT  1359
             ||| |||||||||| |||
Sbjct  1205  CCAATCTATTTAATTGTT  1222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64639145765


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5