BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04460.1 Length=1723 Score E Sequences producing significant alignments: (Bits) Value Ahg927989 jgi|Araly1|927989|scaffold_300446.1 1958 0.0 > Ahg927989 jgi|Araly1|927989|scaffold_300446.1 Length=1222 Score = 1958 bits (1060), Expect = 0.0 Identities = 1166/1218 (96%), Gaps = 4/1218 (0%) Strand=Plus/Plus Query 144 GGAGGAGGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 203 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 GGAGGAAGAAGAAGATGTTGTTTCAGGTGGGAGGTGAAGGCACACGCCCCACCTTCTTTG 66 Query 204 AGATGGCTGCTGCTCAGCAACTTCCTGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 263 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 67 AGATGGCTGCTGCTCAGCAACTCCCGGCTAGCCTTCGCGCCGCTCTCACCTATTCCCTCG 126 Query 264 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGACTATGAGGATGAATTCT 323 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 127 GCGTTTTTGCTTTGAGACGATCGTTTCTCCATAAGATTTTAGATTATGAGGATGAATTCT 186 Query 324 TTGCTGCTCTGATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGGTTCCTTTG 383 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 187 TTGCTGCTCTCATGCTTATTCTTGAAGGACACAGCTTACGAACCACAGATGCTTCCTTTG 246 Query 384 CTGAATCATTGTATGGTTTAAGGAGGAAATCAGCGAGATTGAGATTGAGGAAAGACAGTG 443 ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| Sbjct 247 CTGAATCATTGTATGGTTTGAGGAGGAAATCGGTGAGATTGAGATTGAGGAAAGACAGTG 306 Query 444 CCAGGAAGGATTCTAGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGTCAGAGAATCC 503 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 307 TCAGGAAGGATTCCGGCGAAGAAGTTCAACATTCTGGTTTAGAGAAGCGCCAGAGAATCC 366 Query 504 TTTCTGTTGTGTTTCTGGTTGTGTTACCGTATTTCAAGTCAAAATTGCATGCTATATATA 563 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 367 TTTCTGTTGTGTTTCTGGTTGTATTACCGTATTTCAAGTCAAAATTGCATGCTATCTATA 426 Query 564 ATAAAGAAAGAGAGGCTAGGCTCCGGGAAAGTTTATGGGGTGCAGAGGATCAAGGATTTG 623 ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 427 ATAAAGAAAGAGAAGCTAGGCTCCGGGAAAGTTTATGGGGAGCAGAGGATCCAGGATTTG 486 Query 624 ATGAAGCTGACTTCTTCACAGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 683 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 487 ATGAAGCTGACTTCTTTACTGGGGATGATTCAATTGTTTCAAGAGAGCCTAGTGGGAATG 546 Query 684 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATTAAAAAGTTTATAGCTGTCTGCT 743 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 547 AAGAGCTTTCTGTTCGAGTACAATTAGCTACCAAAATAAAAAAGTTTATAGCTGTCTGCT 606 Query 744 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 ATCCTTGGATACATGCATCAAGTGAAGGATTATCGTTCACTTACCAGCTCTTATATCTGC 666 Query 804 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTAGAG 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 667 TGGACGCTACTGGATTTTATTCTCTTGGGCTACAAGCTCTTGGGATTCAAGTTTGTCGAG 726 Query 864 CTACAGGGCAAGAACTGATGGATACATCCTCAAGGATTTCAAAGATTCGGAATCATGAGC 923 |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 727 CTACAGGGCAAGAACTGATGGATACATCATCAAGAATTTCAAAGATACGGAATCATGAGC 786 Query 924 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACGGTGCAAGGGGCACTTCTTAGCTGCT 983 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 787 GTGAGAGACTTCGTGGTCCTCCATGGTTAAAAACAGTGCAAGGGGCACTTCTTAGCTGCT 846 Query 984 CATATGCTGTGCTTGACTATGCCCAAACCGGTCTAATTGCAGCAGTTTTTATCTTCAAAA 1043 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 847 CATATGCTGTGCTTGACTACGCCCAAACCGGTCTGATTGCAGCAGTTTTTATCTTTAAAA 906 Query 1044 TGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTC 1103 |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct 907 TGATGGAATGGTGGTATCAATCAGCTGAAGAAAGATTATTAGCTCCAACAGTGTACCCTC 966 Query 1104 CACCTCCACCTCCTCCAGCCCCAAAGATGGCCAAAGAAGGAATCCCTCTACCTCC-AGAC 1162 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || Sbjct 967 CACCTCCACCTCCTCCAGCCCCAAAGATGGCGATAGAAGGAATCCCTCTACCTCCCA-AC 1025 Query 1163 AGATCCCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCT 1222 ||||||||||| || ||||||||||||| ||||||||| |||||||||||||| |||||| Sbjct 1026 AGATCCCTCTGCGCGTTATGCTTGCAAACACGTGCAAACCCATCAGTTGTCACAGTCTCT 1085 Query 1223 GGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1282 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1086 GGATTTGTTTTCTGCTACTCATGCGTATTTAAGTATGTTTCAAAGTACAAGCGATGTCCG 1145 Query 1283 GTGACATTGATTCCAGCCAGCGTTGA-TCAGATTAGGAGGTTGTTTCAGGACACTTAGGA 1341 |||||||||||||| ||||| || || ||||||||||||||||||||| |||||||| | Sbjct 1146 GTGACATTGATTCCGGCCAGTGT-GAATCAGATTAGGAGGTTGTTTCATGACACTTAATA 1204 Query 1342 CCAGTCTATTTAATGGTT 1359 ||| |||||||||| ||| Sbjct 1205 CCAATCTATTTAATTGTT 1222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64639145765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5