BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04610.1 Length=2058 Score E Sequences producing significant alignments: (Bits) Value Ahg477721 jgi|Araly1|477721|fgenesh2_kg.3__422__AT3G04610.1 3182 0.0 > Ahg477721 jgi|Araly1|477721|fgenesh2_kg.3__422__AT3G04610.1 Length=2024 Score = 3182 bits (1723), Expect = 0.0 Identities = 1950/2054 (95%), Gaps = 37/2054 (2%) Strand=Plus/Plus Query 1 ACCCGCCTCCATTGTTACCGGAATCTCTCTCTTTCTCCGCCGAACTTCTTCGAATCAAGT 60 |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| Sbjct 1 ACCCGCCTCCATTGTTACCGGAATCTCTCTCTCTCTCCGCCGAACCTCTTCGATTCAAGT 60 Query 61 TTCCGTTTATCACTCTAATATTGTTAAAGTTTCCACTGATACCACCGCTCTAGTCATGGC 120 ||||||||||||||||| || |||| ||| ||||| |||||||||||||||||||||||| Sbjct 61 TTCCGTTTATCACTCTACTACTGTTTAAGGTTCCATTGATACCACCGCTCTAGTCATGGC 120 Query 121 TGAAGCTGAAGATCAGCAAAATTTCGTTGCACACAATGGAGATCAGGTACCAGATCAAGG 180 |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 121 TGAAGCTGAAGATCAGCAAAATTTTGTTGCACACAATGGAGATCAGGTACCAGCTCAGGG 180 Query 181 GTCAGATGAGTTGCATAATGGGTTACCGTACCAGGTTCATGATGAGACCCTTGTTCACCA 240 || ||||||| ||||||||||||||||||| | | || |||||||| Sbjct 181 GTTAGATGAGGTGCATAATGGGTTACCGTA-C-----C------AG------GTTCACCA 222 Query 241 ACCATACGAGGT-TGAAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCCGA 299 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || Sbjct 223 ACCATACGAGGTAT-CAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGA 281 Query 300 CTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 359 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 282 CTCTTGAACCTCAGCAGTACGAGCTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 341 Query 360 TTGATGATCAGTTAGAGTATCATCAATACCAGTTGCAGGACCAGGCTAATGAAGATGTCC 419 || ||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||| Sbjct 342 TTCATGATCAATTAGAGTATCAACAATACCAGTTGCAGGACCAGACTCATGAAGATGTCC 401 Query 420 AAGATCATTCGCAAGATGACCTACAATATCAGCCACAAAATCAGGAGCAGTTTCAGTTAC 479 ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 402 AAGATCAGCCGCAAGATGACCTACAATATCAGCCACAAGATCAGGAGCAGTATCAGTTAC 461 Query 480 AAGACGAGGCTCATGATCAGGCTCAGTATCAGGC-GCAAGGTGATGTACAAGATCACAAT 538 |||||||||||||||||||||| ||||||||||| | ||||||| | ||||||||||||| Sbjct 462 AAGACGAGGCTCATGATCAGGCCCAGTATCAGGCAG-AAGGTGAGGCACAAGATCACAAT 520 Query 539 GGTGATGAAGTGCAAGATAAAGTAGAAGATGAGGAAGGAATTCCTGAGCATCTTGAGTCT 598 |||||||| ||||||||||||||||||||||||||||||| | | || ||||||| Sbjct 521 GGTGATGATGTGCAAGATAAAGTAGAAGATGAGGAAGGAA-T--T-----TC-TGAGTCT 571 Query 599 CTACAGAAATCAGAGCCTGAAGAAGATGCGACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 658 ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 572 CTACAGAAATCAGAGTCTGAAGAAGGTGCAACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 631 Query 659 GGATGGCCCGGAGAGACGGTATTCCGTATGCTGGTTCCTGCACAGAAAGTGGGTAGCATC 718 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 632 GGATGGCCCGGAGAGACGGTCTTCCGCATGCTGGTTCCTGCACAGAAAGTGGGTAGTATC 691 Query 719 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 751 Query 779 ATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 838 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 752 ATTCTCGATGGTCCTCCAGGCACAACCGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 811 Query 839 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTCCACATGCGGATAGTT 898 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 812 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTGCACATGCGGATAGTT 871 Query 899 GATGGTTTGGATGGTGAAGCTTCTCAAGCCCCTCCGCCTTCAAAGGTGTCAACAAGATTA 958 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 872 GATGGTTTGGATGGTGAACCTTCTCAAGCCCCTCCGGCTTCAAAGGTGTCAACAAGATTA 931 Query 959 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 991 Query 1019 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTACCTGTTTTT 1078 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 992 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTGCCTGTTTTT 1051 Query 1079 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAGAGCC 1138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1052 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAAAGCC 1111 Query 1139 TTGGAGCTGATTGCGTCACATCTCAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1198 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1112 TTGGAGCTGATTGCATCACATCTAAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1171 Query 1199 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGACCATATGCCACCACCACACCAG 1258 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1172 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGATCATATGCCACCACCACATCAG 1231 Query 1259 TCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1232 GCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1291 Query 1319 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1292 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1351 Query 1379 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1352 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1411 Query 1439 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1412 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1471 Query 1499 ATGCAGATTCCACTGTCTTATGCTGATGCTGTAATTGGGACGTCGGGTTCAAACATAAGC 1558 |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1472 ATGCAGATTCCACTTTCTTATGCTGATGCTGTAATTGGGACATCAGGTTCAAACATAAGC 1531 Query 1559 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1532 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1591 Query 1619 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCCGTGCAGCTTATT 1678 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1592 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCTATGCAGCTAATT 1651 Query 1679 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1652 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1711 Query 1739 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTTTACGCAGCGGCTCCAACA 1798 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1712 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTCTACGCAGCAGCTCCAACA 1771 Query 1799 AACCCGCCTGGAGGATACGCTACGGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1858 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1772 AACCCGCCTGGAGGATACGCTACAGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1831 Query 1859 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGGAAA-CGCTAGATGC 1917 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1832 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGAAAAACGCTAGATGC 1891 Query 1918 CTAATCGAGTATATGTTGTTATTAGCGAGCACTCTGTGTACTGACAATCAATTATTAT-A 1976 ||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||| | Sbjct 1892 CTAATTGAGTATATGCTGTTATTAGCGAGCGCCCTGTGTACTGAGAATCAATTATTATTA 1951 Query 1977 T--CACTTGTTTTGAGACTTCTTCATTTGTGTACTATTCATAACATT-GATCTAACCGGA 2033 | || ||||||||||||||||||||||||||||| |||| |||||| | |||| ||||| Sbjct 1952 TATCAGTTGTTTTGAGACTTCTTCATTTGTGTACTGTTCAAAACATTAG-TCTACCCGGA 2010 Query 2034 AATCTTCTTTATAT 2047 ||| |||||||||| Sbjct 2011 AATTTTCTTTATAT 2024 Score = 128 bits (69), Expect = 2e-28 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 281 TACGAGGTACCAGATCCGACTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTT 340 ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 227 TACGAGGTATCAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGACTCTT 286 Query 341 GAACCTCAGCAGTACGAG 358 |||||||||||||||||| Sbjct 287 GAACCTCAGCAGTACGAG 304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77399377840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5