BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04730.1 Length=1279 Score E Sequences producing significant alignments: (Bits) Value Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 1681 0.0 Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 73.1 5e-12 > Ahg477742 jgi|Araly1|477742|fgenesh2_kg.3__443__AT3G04730.1 Length=1201 Score = 1681 bits (910), Expect = 0.0 Identities = 1150/1255 (92%), Gaps = 60/1255 (5%) Strand=Plus/Plus Query 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACATCCCCCTAtctctctctctctTCAAA 60 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || | Sbjct 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACAT-CCGCTCTCTCTCTCTCTCTCCAGA 59 Query 61 CGTTTTAGTTCCCCaaaaaaatatcaaaagaactaaaagaaaaaCCCTAGAAGCCGAAGA 120 | ||||||| ||| |||| | | | || |||| ||||||||||||||||||||| Sbjct 60 CAATTTAGTT-CCC-AAAAGA-A-C----TAA--AAAA-AAAAACCCTAGAAGCCGAAGA 108 Query 121 ATCTCCTACTCGTTGTCGATCGGATCACCTAACTAATTACTCGTTGATAATCATTATATC 180 || | ||||||| | | | |||||||||| |||| |||||||||||| |||||||||||| Sbjct 109 ATTTACTACTCG-T-T-G-TCGGATCACCGAACTTATTACTCGTTGAGAATCATTATATC 164 Query 181 GAGAAATATGATTAATTTTGAGGCCACGGAGCTGAGATTAGGGCTACCGGGTGGGAATCA 240 | ||||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 165 AAAAAATATGATTAATTTCGAGGCGACGGAGCTGAGGTTAGGGCTGCCGGGTGGTAATCA 224 Query 241 CGGAGGAGAAATGGCT-GGAAAAAATAATGGTAAAAGAGGATTTTCTGAGACTGTTGATC 299 |||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||| Sbjct 225 CGGAGGAGAAATGG-TCGGAAAAAATAATGGCAAAAGAGGATTTTCTGAGACCGTTGATC 283 Query 300 TCAAACTGAATCTTTCATCGACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 359 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 284 TCAAACTGAATCTTTCATCAACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 343 Query 360 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 344 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 403 Query 420 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAG 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 404 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGTAG 463 Query 480 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCCTCCGCATGTGCCACCG 539 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 464 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCATCCGTATGTGCCGCCG 523 Query 540 TGGCTTATGTGAAGGTTAGCATGGACGGTGCACCGTACCTACGGAAAATTGACTTGAAAC 599 | ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 524 TCGCTTACGTGAAGGTTAGCATGGATGGCGCACCGTACCTACGGAAAATTGACTTGAAAC 583 Query 600 TCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 659 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 584 TCTACAAAACTTACCAAGATCTATCCGACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 643 Query 660 TAGGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 719 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 TAGGCACCTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 703 Query 720 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 763 Query 780 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 823 Query 840 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 883 Query 900 TTCTCGACGACATTTCGTGTTCTTACCTAAAAAAGGAAGAAAGCCTGTTTCGATCGGTTG 959 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 884 TTCTCGACGACATTTCTTGTTCTTACCTAAAAAAGGAAGAAAGACTGTTTCGATCGGTTG 943 Query 960 GATATCTCGAACCGAG-AAAGCTAAACCGGCTCGAAACTATTGTTCCGAGCAAGGAGTTT 1018 |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 944 GATATCTCGAACCGAGAAAAGCCAAACCGGCTCGAAACTACTGTTCCGAGCAAGGAGTTT 1003 Query 1019 GCttataatattaattaataataatattaatattgtggtgtattacattttaaaaa-att 1077 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || Sbjct 1004 GCTTATAATATTAATTAATAATAATATTAATATTGTGATGTATTACA-TTTAAAAATTTT 1062 Query 1078 aaatCGTTTTTGTtatatgtattatatacatatattaatatgtatatTTAATTAGGTTGC 1137 ||| || | || | || | ||| || || | ||||||||||||||||||||| Sbjct 1063 AAACCG----T-TT-T-TG---T-TAT--ATGTA-T--TATGTATATTTAATTAGGTTG- 1105 Query 1138 ATCTATTTCCGTTAAAACCAACTTTTGTTTTTACGCATTATCGTGTTGTCTATATGGTCT 1197 | | | | | | || |||||||||||||||||||||||||||||||| Sbjct 1106 --C-A--T-C--T-------A---TT-TTTTTACGCATTATCGTGTTGTCTATATGGTCA 1146 Query 1198 GTGTCCGTAAGGCA--TC-TTAATGTGTTACTTTGACGTACCAAATTATTACTTA 1249 |||||||||||||| || ||| ||||||||||||||||| |||||||||||||| Sbjct 1147 GTGTCCGTAAGGCACATCATTAGTGTGTTACTTTGACGTATCAAATTATTACTTA 1201 > Ahg470401 jgi|Araly1|470401|fgenesh2_kg.1__355__AT1G04250.1 Length=1037 Score = 73.1 bits (39), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 5/72 (7%) Strand=Plus/Plus Query 387 CCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAACGTCATG-TC 444 ||||||||||||||||||||||||||||||| | |||| | ||| |||||||| ||| | Sbjct 353 CCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAACGTGATGGTT 411 Query 445 -CG-GCCAAAAA 454 || |||||||| Sbjct 412 TCGTGCCAAAAA 423 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47806137918 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5