BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G04790.1 Length=1928 Score E Sequences producing significant alignments: (Bits) Value Ahg928039 jgi|Araly1|928039|scaffold_300496.1 1421 0.0 Ahg928040 jgi|Araly1|928040|scaffold_300497.1 883 0.0 > Ahg928039 jgi|Araly1|928039|scaffold_300496.1 Length=874 Score = 1421 bits (769), Expect = 0.0 Identities = 843/878 (96%), Gaps = 8/878 (1%) Strand=Plus/Plus Query 26 ACCATTCTCAATCCTCTCTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCTCACCTT 85 ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ACCATTCTCAA---TC-CTCTCCAATGGCTTCCTTATCCTTCGTTTCCTCTTCCCACCTT 56 Query 86 ACGCTACGCACTCCTTCTATTGCCCTACGCAGCACTGGCTCTTCTCCTCGAACCTCCGTT 145 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 57 ACGCTACGCACTCCTTCTATTTCCCTACGCAGCACTGGCTCTTCTCCTAGAACCTCCGTT 116 Query 146 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 TCATTCTCCGTCAAGGCTCAATCCGTCGCGCTTTCACAGGACGATTTGAAGAAGCTCGCG 176 Query 206 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGGATGGTTCTAGGGCTCGGAACCGGATCC 265 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 177 GCGGAGAAAGCTGTGGAGGCAATTAAACCTGGAATGGTTCTAGGTCTCGGAACCGGATCC 236 Query 266 ACCGCAGCTTTCGCTGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 325 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 ACCGCAGCTTTCGCCGTTGATCAGATCGGGAAACTACTCTCTTCCGGTGAACTCTACGAT 296 Query 326 ATTGTCGGTATCCCAACGTCGAAACGAACGGAGGAACAAGCACGGTCGTTAGGGATTCCT 385 ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 297 ATTGTTGGTATCCCAACGTCCAAACGAACGGAGGAACAAGCACGATCGTTAGGGATTCCT 356 Query 386 CTTGTTGGGTTAGATACACATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 445 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTTGTTGCGTTAGATACGCATCCGAGAATCGATCTCGCTATTGACGGAGCAGACGAGGTA 416 Query 446 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGTGAGAAAATGGTG 505 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 417 GATCCGAATCTTGATTTAGTCAAAGGTCGTGGAGGTGCTCTTCTCCGGGAGAAAATGGTG 476 Query 506 GAAGCTGTGGCTGACAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 565 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GAAGCTGTGGCTGAGAAGTTTATTGTTGTGGCTGATGATACCAAACTCGTTACAGGACTC 536 Query 566 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GGTGGAAGTGGATTAGCTATGCCGGTGGAAGTTGTTCAATTCTGCTGGAACTTTAATTTG 596 Query 626 ATTAGATTGCAAGACCTCTTCAAGGAATTTGGATGTGAAT-CAAAGCTTAGAGTTGATGG 684 ||||||||||| || || || ||||||||||||||||| | | ||||||||||||||||| Sbjct 597 ATTAGATTGCAGGATCTGTTTAAGGAATTTGGATGTGA-TGCTAAGCTTAGAGTTGATGG 655 Query 685 TGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAC 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 AGATGGCAAGCCTTATGTGACTGATAACAGTAATTACATTATTGATTTGTATTTTAAGAA 715 Query 745 TCCTTTGAAGGATGGATTCGCTGCGGCTAAAGAGATTGGGAAGTTTCAAGGAGTGGTGGA 804 ||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| Sbjct 716 TCCTTTGAAGGATGGATTCGCGGCGGCGAAAGAGATCGGCAAGTTTCAAGGAGTGGTGGA 775 Query 805 GCATGGTCTGTTTCTCGGAATGGCTACTTCTGTCATTATCGCTGGAAAGAATGGCGTTGA 864 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 776 GCATGGTCTGTTTCTAGGAATGGCTACTTCTGTGATTATCGCTGGAAAGAATGGTGTTGA 835 Query 865 AGTTATGACCAAGTGAGGTT-AAAAGTTCAATCTTTCT 901 |||||||||||||||||||| |||| |||||||||||| Sbjct 836 AGTTATGACCAAGTGAGGTTCAAAA-TTCAATCTTTCT 872 > Ahg928040 jgi|Araly1|928040|scaffold_300497.1 Length=607 Score = 883 bits (478), Expect = 0.0 Identities = 569/612 (93%), Gaps = 10/612 (2%) Strand=Plus/Minus Query 1144 GAGAGATTGAGAAACT-TTCATTAGATTGGAACGAATCGCTTGACGATGCGTCTTCCAGC 1202 |||| ||||||||| | |||| ||||||||||||||||||||||||||||||| ||||| Sbjct 607 GAGAAATTGAGAAA-TACTCATCAGATTGGAACGAATCGCTTGACGATGCGTCTCCCAGC 549 Query 1203 AACTGCAGCCAAAGCCGCAACTCCTCCGACAGCTCCGGCAACCACAGCGGATCTAGGTCC 1262 ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 548 AACCGCCGCCAAAGCCGTAACTCCTCCGACAGCTCCGGCAACCACAGCGGATCTAGGTCC 489 Query 1263 AGAAGCAGCTCTGTAAAGCACACCAGTGGCTAAACCAGCGATCACAGTTGTCAACGAACC 1322 |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 488 AGAAGCAGCTCTGTAAAGCACACCAGTGGCTAAACCAGCGATGACAGTTGTCCTCGAACC 429 Query 1323 GTCGTCTCCGTCTCTCATATACGTAACACCGCTCTCCATAGCAGCAAACATCAACCCTAC 1382 ||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||| | Sbjct 428 GTCGTCTCCGTCTCTCAGATACGTAACACCACTCTCCATAGCTGCGAACATCAACCCAAT 369 Query 1383 GGATCCTAAGCAATTCCCGCCGCGTCTTGCAACGAGTCCACCGGAGTTCAAAATCCGATT 1442 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 AGAGCCTAAGCAATTCCCGCCGCGTCTTGCAACGAGTCCACCGGAGTTCAAAATCCGATT 309 Query 1443 AGTTCGGATCTTTAGGGATTCGCCTCGTTCGGCGGCTC-GCATCCCCGC-AATTGTACCC 1500 |||||||||||||||||||||||||| ||||||||||| | ||||| | || ||||||| Sbjct 308 AGTTCGGATCTTTAGGGATTCGCCTCTTTCGGCGGCTCCG-ATCCC-GTTAAATGTACCC 251 Query 1501 TTGAAGGCTCCGAGAACAGATCCAGTG-CAATAACCCCAACCGGTGAAGAAGGTGAGGTT 1559 |||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||| Sbjct 250 TTGACGGCTCCGAGAACCGATCCAGTGACA-TAACCCCAACCGGTGAAGAAGGTGAGGTT 192 Query 1560 CTCTCCCCATGTTAAGCGTTTTTTCGTAGCTTCTTCTTCGAAGAGAAACTCAGGAGAAGT 1619 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 191 CTCTCCCCATGTTAAGCGTTTTTTCGTAGCTTCTTCTTCGAAGAGAAACTCCGGCGAAGT 132 Query 1620 TGGGAGTTCGTAGAGCTTACGGTACGGAAGATTGACTTGTTGGTAAGGATTGTACTGACG 1679 |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 131 TGGGAGTTCGTATAGCTGACGGTACGGAAGATTGACTTGTTGGTAGGGATTGTACTGACG 72 Query 1680 GTACTTCTGCTGTTGTTGAT-GCCCGGTGCTATGGTTCATCGGATCCGCCATTATCAGGG 1738 ||||||||| |||||||||| ||| ||||||| ||||| |||||||||||||| |||||| Sbjct 71 GTACTTCTGGTGTTGTTGATCGCC-GGTGCTAGGGTTCGTCGGATCCGCCATTGTCAGGG 13 Query 1739 CTTCTGCGTTTC 1750 ||| |||||||| Sbjct 12 CTTTTGCGTTTC 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72447645990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5