BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G04910.1
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317356 jgi|Araly1|317356|fgenesh1_pm.C_scaffold_3000372 3446 0.0
Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2 833 0.0
> Ahg317356 jgi|Araly1|317356|fgenesh1_pm.C_scaffold_3000372
Length=2103
Score = 3446 bits (1866), Expect = 0.0
Identities = 2026/2105 (96%), Gaps = 4/2105 (0%)
Strand=Plus/Plus
Query 450 ATGAACAATCTGAGTTATCTTGAACCAGATTACTCTGAGTTTGTTGAAGTTGATCCTACT 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACAATCTGAGTTATCTTGAACCAGATTACTCTGAGTTTGTTGAAGTTGATCCTACC 60
Query 510 GGAAGATATGGAAGATACAATGAAGTTCTTGGTAAAGGAGCTTCAAAGACTGTTTATAGA 569
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAAGATATGGAAGATACAATGAAGTTCTGGGTAAAGGAGCTTCAAAGACTGTTTATAGA 120
Query 570 GCATTTGATGAATATGAAGGCATAGAAGTAGCATGGAACCAAGTTAAGCTATATGATTTC 629
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 121 GCATTTGATGAATATGAAGGCATAGAAGTAGCATGGAACCAAGTGAAGCTCTACGATTTC 180
Query 630 CTACAAAGCCCTGAGGATCTTGAGAGGCTTTACTGTGAGATTCATCTTCTCAAGACTCTA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTACAAAGCCCTGAGGATCTTGAGAGGCTTTACTGTGAGATTCATCTTCTCAAGACTCTT 240
Query 690 AAACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATC 749
|||||||||||||| |||||||||||||| |||||||| |||||||||||| | ||||||
Sbjct 241 AAACATAAGAACATTATGAAATTCTACACGTCTTGGGTTGATACCGCCAATAGGAATATC 300
Query 750 AATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAATATAGACTCAGACATAAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 301 AATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAATATAGACTCGGGCATAAG 360
Query 810 AGAGTGAACATAAGAGCTATGAAGCATTGGTGCAGACAAATCTTGAGAGGCTTACATTAT 869
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 361 AGAGTGAACATAAGAGCGATGAAGCATTGGTGTAGGCAAATCTTGAGAGGCTTACATTAT 420
Query 870 CTTCACAGCCATGATCCTCCTGTGATCCACAGGGATCTCAAATGTGACAACATTTTCGTT 929
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCATAGCCATGATCCTCCTGTGATCCACAGGGATCTCAAATGTGACAACATTTTCGTT 480
Query 930 AACGGGAATCAAGGAGAGGTCAAGATTGGAGATCTTGGCCTTGCTGCTATTTTAAGAAAG 989
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 AACGGGAATCAAGGAGAAGTCAAGATTGGAGATCTTGGCCTCGCTGCCATTTTAAGAAAG 540
Query 990 TCCCATGCTGCTCACTGCGTCGGGACTCCTGAGTTCATGGCACCTGAAGTTTACGAAGAA 1049
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCCATGCTGCTCACTGCGTTGGGACTCCTGAGTTCATGGCACCTGAAGTTTACGAAGAA 600
Query 1050 GCATATAACGAATTGGTTGATATATACTCGTTCGGTATGTGTATTTTGGAGATGGTTACG 1109
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 601 GCGTATAACGAATTGGTTGATATATACTCGTTCGGTATGTGCATTTTGGAAATGGTTACG 660
Query 1110 TTTGATTACCCGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTTATGTCG 1169
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 661 TTTGATTACCCGTACAGTGAGTGTACTCACCCTGCTCAGATCTACAAAAAAGTTATGTCG 720
Query 1170 GGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGTTTCATTGAG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGTTTCATTGAG 780
Query 1230 AAATGCTTGGCCACCGTATCGCTTAGAGTCTCTGCTCGTGAGTTACTAGATGACCCTTTT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAATGCTTGGCCACCGTATCGCTTAGAGTCTCTGCTCGTGAGTTACTAGATGACCCTTTT 840
Query 1290 CTCCGTATAGACGATGGTGAGTTTGATTTAAGATCAGTTGATATGGAAGATTCGGTCGGG 1349
||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 841 CTCCGAATAGACGATGGTGAATTTGATTTAAGATCACTTGATATGGATGATTCGGTCGGT 900
Query 1350 CCACTCTATAGGCAGCCGCACCATCTTCCTGACTACTACAATTACCCGTCGAATAGTAGC 1409
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 CCACTCTATAGGCAGCCCCACCATCTTCCTGACTACTACAATTACCCGTCGAACAGTAGC 960
Query 1410 TCTTTGAATCGTCAGTACTCAAATGGCAACTACCCGTCGAATAGTAGCTCATTGAATCGT 1469
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 961 TCTTTTAATCGTCAGTACTCAAATGGCAATTACCCGTCGAATAGTAGCTCTTTGAATCAT 1020
Query 1470 CAGTACTCAAATGGTTATAATAGTCATCACGAGTATCAGAATGGATGGGCGTATAATCCA 1529
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 CAGTACTCAAATGGTTATAATAGTCATCACGAGTATCAGAACGGATGGGCGTATAATCCA 1080
Query 1530 GCTGAGACAGAGGAGACTCACGGCATCGAGCTCTTTGAATCTCGAAACAATGATGATCAA 1589
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1081 GCTGAGACAGAGGAGACTCACGGAATCGAGCTCTTTGAATCTCGAAACGATGATGATCAA 1140
Query 1590 GAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGGAGAGATGAT 1649
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 GAAGAAGAAAAGAAATCTGGTAATGTTGACATAACCATCAAAGGGAAGAGAAGAGATGAT 1200
Query 1650 GGTGGCTTGTTCTTGCGTCTTAGGATCGCTGACAAAGAAGGACGTGTCCGAAACATTTAC 1709
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1201 GGTGGCTTGTTCTTGCGTCTTAGGATCGCCGACAAAGAAGGACGTGTCCGAAACATTTAT 1260
Query 1710 TTCCCATTTGACATTGAGACGGACACCGCATTGAGCGTTGCAACAGAGATGGTAGCGGAA 1769
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTTCCATTTGACATTGAGACGGACACCGCATTGAGCGTTGCAACAGAGATGGTAGCGGAA 1320
Query 1770 CTGGATATGGACGATCATGGAGTCACAAAAATAGCCAACATGATTGACGGTGAGATATCT 1829
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 CTGGATATGGACGATCACGGAGTCACAAAGATAGCCAACATGATTGACGGTGAGATATCT 1380
Query 1830 TCTCTTGTACCTAGTTGGAGACCGGGACCTGAATTCGAAGAATGTCTTGCGGCTGCGGCG 1889
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1381 TCTCTTGTACCCAGTTGGAGACCAGGACCTGAATTCGAAGAATGTCTTGCGGCTGCGGCG 1440
Query 1890 GCGGCAAATGCTGCGAGCATTTGCAACAACTGCGTATCAAACCGCACCTCAATGGGCTCG 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCGGCAAATGCTGCGAGCATTTGCAACAACTGCGTATCAAACCGCACCTCAATGGGCTCG 1500
Query 1950 GTGATGGATTTCCTGAGAACCAATCCTGGGGCAAATGTGATACAATGTTGCAGAAACGGG 2009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTGATGGATTTCCTGAGAACCAATCCTGGGGCAAATGTGATACAATGTTGCAGAAACGGA 1560
Query 2010 TGCGGTGAGACTCATGGTCGGTTTGAAGAGATCACGATCAGAGAAACCGAGGTTCGTCTT 2069
|| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1561 TGTGGCGAGACTCATGGCCGGTTTGAAGAGATCACGATCAGAGAAACCGAAGTTCGTCTT 1620
Query 2070 AGAGAGCTATGGAAGCTGCAGCAACAGCAAGAAAGCCGCGAGCTAAGCTCGATAGATTCA 2129
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AGAGAGCTTTGGAAGCTGCAGCAACAGCAAGAAAGCCGCGAGCTAAGCTCGATAGATTCA 1680
Query 2130 GGCCATAACCATTCCGAAGAAGAGGAGGAAGAAGAGGTGCTATACGAAGACCCCGAAAAC 2189
||| |||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1681 GGCAATAACCATTCTGAAGAAGAAGAGGAAGAGGAGGTGCTATACGAAAACCCCGAAAAC 1740
Query 2190 ATGTTTTCTTGCGAGGCAGGTAACGA-GATAAACCATATATCGGGTTCTG-GATCGTTCT 2247
|||||||||||||||| ||||||| | |||||||||| |||| ||||||| | |||||||
Sbjct 1741 ATGTTTTCTTGCGAGGAAGGTAAC-ACGATAAACCATCTATCAGGTTCTGAG-TCGTTCT 1798
Query 2248 CGTTTATGCCATCTAAATACTGCGATGAGCCATCCGAAAAAACCGAAAATCAGGTCCAAC 2307
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1799 CGTTTATGCCATCTAAATACTGCGATGAGCTATCCGAGAAAACCGAAAATCAGGTCCAAC 1858
Query 2308 AAGAGTTGAGATGGCTTAAAGCCAAATGCCAAATTGAGCTTAGAGATATTCAGGATGAAC 2367
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1859 AAGAGTTGAGATGGCTTAAAGCCAAATGCCAAATTGAGCTCAGAGATATTCAGGATGAGC 1918
Query 2368 AACTAAAAACCCGGTGGCCGGAATCCGGAGAAGAGGTGGAAATTTCTCCGAAAGACGGGT 2427
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AATTAAAAACCCGGTGGCCGGAATCCGGAGAAGAGGTGGAAATTTCTCCGAAAGACGGGT 1978
Query 2428 TCTTGGGTTCGGTTTCCGGGTTAGGAAGAGAAGAAGATACGGTGAAAGAGATGTTTGGAG 2487
|||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1979 TCTTGGGTTCGGGTTCGGGGTTGGGAAGAGAAGAAGATACGGTAAAAGAGATGTTTGGAG 2038
Query 2488 AAAGATTGGTACCAAAGTGTCTGAAAAGAACAACTTCACTTCCTGTTGATGCCATTGATT 2547
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2039 GAAGATTGGTACCAAAGTGTCTGAAAAGGACAACTTCACTGCCTGTTGATGCCATTGATT 2098
Query 2548 CTTGA 2552
|||||
Sbjct 2099 CTTGA 2103
Score = 84.2 bits (45), Expect = 5e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1388 CAATTACCCGTCGAATAGTAGCTCTTTGAATCGTCAGTACTCAAATGG 1435
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 987 CAATTACCCGTCGAATAGTAGCTCTTTGAATCATCAGTACTCAAATGG 1034
> Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2
Length=1502
Score = 833 bits (451), Expect = 0.0
Identities = 735/872 (84%), Gaps = 19/872 (2%)
Strand=Plus/Plus
Query 449 GATGAACAATCTGAGTTATCTTGAACCAGATTACTCTGAGTTTGTTGAAGTTGATCCTAC 508
|||||||||| | || |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 7 GATGAACAATATCAGCCATCTTGAATCAGATTACTCTGAGTATGTTGAAGTTGATCCTAC 66
Query 509 TGGAAGATATGGAAGATACAATGAAGTTCTTGGTAAAGGAGCTTCAAAGACTGTTTATAG 568
||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| || ||
Sbjct 67 TGGAAGATATGGAAGGTACAATGAAGTTCTGGGTAAAGGATCTTCAAAGACTGTCTACAG 126
Query 569 AGCATTTGATGAATATGAAGGCATAGAAGTAGCATGGAACCAAGTTAAGCTATATGATTT 628
|| ||||||||| ||| |||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 127 AGGATTTGATGAGTATCAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTCTACGATTT 186
Query 629 CCTACAAAGCCCTGAGGATCTTGAGAGGCTTTACTGTGAGATTCATCTTCTCAAGACTCT 688
| | || || ||| | || || |||||||||||||||||||||||||| |||||||||||
Sbjct 187 CTTGCAGAGTCCTCAAGAACTGGAGAGGCTTTACTGTGAGATTCATCTCCTCAAGACTCT 246
Query 689 AAAACATAAGAA-CATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATA 747
|||||| || || ||||||||| |||||| |||||||||||||||||| |||||||| |
Sbjct 247 AAAACACAA-AAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACA 305
Query 748 TCAA-TTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAATATAGACTCAGACAT 806
|||| ||| ||||||||| ||||||||||||||||||| ||||| ||||| || | ||||
Sbjct 306 TCAACTTT-GTCACTGAAATGTTCACTTCTGGCACCTTGAGACAGTATAGGCTAAAACAT 364
Query 807 AAGAGAGTGAACATAAGAGCTATGAAGCATTGGTGCAGACAAATCTTGAGAGGCTTACAT 866
|||||||||||||||||||| | ||| ||||||| ||||| || || ||||||||| |
Sbjct 365 AAGAGAGTGAACATAAGAGCGGTAAAGAATTGGTGTAGACAGATTTTAAGAGGCTTAAAC 424
Query 867 TATCTTCACAGC-CATGATCCTCCTGTGATCCACAGGGATCTCAAATGTGACAACATTTT 925
|||||||| | | ||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct 425 TATCTTCATA-CACATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGACAACATTTT 483
Query 926 CGTTAACGGGAATCAAGGAGAGGTCAAGATTGGAGATCTTGGCCTTGCTGCTAT-TTTAA 984
|||| ||||| |||||||| ||||||||||| |||||||| ||||| ||| | ||||
Sbjct 484 TATTAATGGGAACCAAGGAGAAGTCAAGATTGGTGATCTTGGTCTTGCCGCT-TGTTTAC 542
Query 985 GAA-AGTCCCATGCTGCTCACTGCGTCGGGACTCCTGAGTTCATGGCACCTGAAGTTTAC 1043
|| | || || |||||||| || |||||||| || ||||||||||| || ||||||||
Sbjct 543 -AACACTCTCACGCTGCTCATTGTGTCGGGACACCAGAGTTCATGGCTCCAGAAGTTTAT 601
Query 1044 GAAGAAGCATATAACGAATTGGTTGATATATACTCGTTCGGTATGTGTATTTTGGAGATG 1103
|||||| ||||||| |||| || ||||| ||||||||||| |||||| ||||||| |||
Sbjct 602 AAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGGATGTGTGTTTTGGAAATG 661
Query 1104 GTTACGTTTGATTACCCGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTT 1163
|| || |||||||||||||| || |||||| |||| |||||||| || ||||||| ||||
Sbjct 662 GTAACATTTGATTACCCGTATAGCGAGTGTTCTCACCCTGCTCAAATTTACAAGAGAGTT 721
Query 1164 ATGTCGG---GCAAGAAACCGGATGCATT-GTACAAGGTGAAAGACCCCGAGGTTAAATG 1219
|| |||| | |||||||| |||| | | | |||| |||||||| || || |||| | |
Sbjct 722 ATATCGGTAAGAAAGAAACCAGATGGACTAG-ACAAAGTGAAAGATCCAGATGTTAGAGG 780
Query 1220 -TTTCATTGAGAAATGCTTGGCCACCGTATCGCTTAGAG-TCTCTGCTCGTGAGTTACTA 1277
||| || ||||| || |||||||| || || ||||| | |||||||| |||| |||||
Sbjct 781 CTTT-ATAGAGAAGTGTTTGGCCACTGTGTCACTTAG-GCTCTCTGCTTGTGAACTACTA 838
Query 1278 GATGACCCTTTTCTCCGTATAGACGATGGTGA 1309
|| |||| |||||| |||| || || |||||
Sbjct 839 GACGACCATTTTCTTTGTATCGATGAAGGTGA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102081856600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5