BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05030.1 Length=2146 Score E Sequences producing significant alignments: (Bits) Value Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1 2630 0.0 Ahg942396 jgi|Araly1|942396|scaffold_602940.1 1524 0.0 > Ahg477785 jgi|Araly1|477785|fgenesh2_kg.3__486__AT3G05030.1 Length=1632 Score = 2630 bits (1424), Expect = 0.0 Identities = 1570/1640 (96%), Gaps = 11/1640 (1%) Strand=Plus/Plus Query 348 ATGACAATGTTCGCCTCTTTAACCTCTAAAATGCTATCGGT-GTCAACTTCTGATCACGC 406 ||||||||||||||||||||||| ||||||||| |||| || |||||||||||| ||||| Sbjct 1 ATGACAATGTTCGCCTCTTTAACGTCTAAAATGTTATC-GTCGTCAACTTCTGACCACGC 59 Query 407 ATCTGTCGTTTCACTTAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTCATTGGCCA 466 ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 60 CTCTGTGGTTTCACTCAATCTCTTTGTTGCCCTTCTATGTGCTTGTATCGTGATTGGGCA 119 Query 467 TCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTATTGATTGGGCTTGG 526 |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| | Sbjct 120 TCTTCTGGAGGAGAATCGATGGATGAACGAATCTATCACAGCTTTATTGATTGGGCTTTG 179 Query 527 CACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAACTCACATCTCTTGGTCTTTAG 586 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || Sbjct 180 CACTGGTGTCGTCATTTTGTTGATTAGTAGAGGGAAAAACTCACATCTGTTGGTCTTCAG 239 Query 587 TGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGGTTTCAAGT 646 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 CGAAGATCTTTTCTTTATATATCTTTTGCCACCCATAATATTCAATGCAGGATTTCAAGT 299 Query 647 AAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTTTGGCGCCATTGGGAC 706 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 300 AAAAAAGAAGCAATTTTTCCGAAATTTTGTAACTATCATGGCTTTTGGCGCCATCGGGAC 359 Query 707 CGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 766 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 CGTAGTTTCTTGCACCATAATATCTCTCGGTGCAATTCAGTTCTTTAAGAAATTAGACAT 419 Query 767 TGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 826 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGGGACCTTTGACTTAGGCGATTTTCTTGCAATCGGCGCCATATTTGCTGCAACCGACTC 479 Query 827 TGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATT 886 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 TGTATGCACCCTGCAGGTTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTCTT 539 Query 887 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCTATTCAGAGTTT 946 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 540 TGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGTGCTCTTCAATGCAATTCAGAGCTT 599 Query 947 TGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAATTTCTTGGGAACtttttttATCT 1006 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 600 TGACCTCACCCACCTCAACCATGAAGCAGCTTTTCAATTTCTTGGGAACTTCTTCTATCT 659 Query 1007 GTTTCTCTTGAGCACCGGACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 1066 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTTTCTCTTGAGCACCGTACTTGGTGTCGCAACTGGTCTGATAAGTGCTTATGTCATCAA 719 Query 1067 GAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 1126 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GAAGCTATATTTTGGAAGGCACTCGACTGATCGAGAAGTTGCCCTCATGATGCTTATGGC 779 Query 1127 TTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGTGGTATCCTAACTGTATTTTT 1186 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 ATATCTTTCATACATGCTTGCTGAGCTATTCGCCTTGAGTGGTATTCTAACTGTATTTTT 839 Query 1187 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTCACCGAGAGCTCAAGAATTAC 1246 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 840 CTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTAACCGAGAGCTCAAGAATTAC 899 Query 1247 TACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAGACTTTTATTTTCCTCTACGT 1306 ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 900 TACCAAGCATGCCTTTGCTACTTTGTCATTTCTTGCTGAAACTTTTATTTTCCTCTACGT 959 Query 1307 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTGAGTGACAGCCCGGGGACATC 1019 Query 1367 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AGTTGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCTTTTGTCTT 1079 Query 1427 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGCATCAGAGCGAGAAAATCAGCATCAA 1486 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1080 TCCTCTTTCCTTCTTATCAAACTTAGCCAAGAAGAATCAGAGCGAGAAAATCAACATCAA 1139 Query 1487 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GCAGCAAGTTGTGATCTGGTGGGCTGGTCTAATGAGAGGTGCTGTATCTATGGCTCTTGC 1199 Query 1547 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CTACAATAAGTTTACAAGATCAGGGCACACAGAATTGCGCGGGAATGCAATCATGATTAC 1259 Query 1607 CAGTACAATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTAACCAAACCACT 1666 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1260 CAGTACTATAACCGTCTGTCTTTTTAGCACCATGGTGTTTGGTATGCTGACCAAACCGCT 1319 Query 1667 GATTAGATACCTAATGCCACACCAAAAAGCGACCACCAGTACCACGAGTATGTTATCGGA 1726 ||| ||||||||||||||||| |||||||||||||| | | | ||||||||| || Sbjct 1320 GATAAGATACCTAATGCCACATCAAAAAGCGACCAC--G-A----G--TATGTTATCCGA 1370 Query 1727 CGATAGCACTCCGAAATCAATCCACATTCCGCTCCTCGATGGTGAACAGCTAGATTCATT 1786 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1371 CGATAACACTCCGAAATCAATCCACATTCCGCTCCTCGATGGCGAACAGCTAGATTCATT 1430 Query 1787 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAACAGCCTTCGAGGTTTCCTCAT 1846 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1431 TGAGTTACCTGGGAGCCACCAGGACGTGCCACGACCAAATAGCCTTAGAGGTTTCCTCAT 1490 Query 1847 GCGCCCCACACGGACTGTCCACTATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1906 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1491 GCGCCCCACACGCACTGTCCACCATTACTGGAGACAGTTTGATGATGCCTTCATGCGTCC 1550 Query 1907 TGTGTTTGGTGGTCGCGGATTCGTTCCCTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAG 1966 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1551 TGTGTTTGGTGGTCGCGGTTTCGTTCCGTTTGTCCCTGGTTCTCCGACTGAGAGAAGCAC 1610 Query 1967 CCATGATCTTAGTAAACCTT 1986 ||||||||| |||||||||| Sbjct 1611 CCATGATCTCAGTAAACCTT 1630 > Ahg942396 jgi|Araly1|942396|scaffold_602940.1 Length=1837 Score = 1524 bits (825), Expect = 0.0 Identities = 1367/1622 (84%), Gaps = 63/1622 (4%) Strand=Plus/Plus Query 396 TCTGATCACGCATCTGTCGTTTCACTT-AATCTCTTTGTTGCCCTTCTATGTGCTTGTAT 454 ||||||||||| ||||| ||| | || |||||||||||||| ||||| ||||||||||| Sbjct 77 TCTGATCACGCTTCTGTTGTTGC-GTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTAT 135 Query 455 CG-TCATTGGCCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTAT 513 | || |||| ||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 136 TGTTC-TTGGTCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACCGCCTTAT 194 Query 514 TGATTGGGCTTGGCACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAA-CTCACAT 572 |||||||||| ||||||||||| | ||| ||||||||||||| ||| ||||| ||||||| Sbjct 195 TGATTGGGCTAGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGG-AAAAAGCTCACAT 253 Query 573 CT-CTTGGTCTTTAGTGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAA 631 || || | |||||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 254 CTTCTCG-TCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAA 312 Query 632 TGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTT 691 ||||||||||||||| |||||||||||||||||||| ||||| || ||||||||| |||| Sbjct 313 TGCAGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTATG-CTTT 371 Query 692 T-GGCGCCATTGGGACCGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCT 750 | || || ||||||| | ||||||||||| || ||||||||||||| || ||||||| Sbjct 372 TTGGTGCTGTTGGGACTATTGTTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCT 431 Query 751 TTAAGAAATTAGACATTGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATAT 810 |||||||||| ||||||||||||||||||||||| |||| |||||| ||||| || |||| Sbjct 432 TTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCTATCGGTGCAATAT 491 Query 811 TTGCTGCAACCGACTCTGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGC 870 |||| ||||| || ||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 492 TTGCCGCAACAGATTCTGTGTGTACACTGCAGGTTCTGAATCAAGATGAGACACCTTTGC 551 Query 871 TTTACAGTCTTGTATTTGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGT-GCTCTTC 929 |||||||||||||||| |||||||| |||||||||||||||||||| ||||| | ||||| Sbjct 552 TTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTTG-TCTTC 610 Query 930 AATGCTATTCAGAGTTTTGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAAT-TTCT 988 ||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| | |||| Sbjct 611 AATGCGATTCAGAGCTTTGACCTCACTCACCTAAACCATGAAGCTGCTTTTCA-TCTTCT 669 Query 989 TGGGAACtttttttATCTGTTTCTCTTGAGCACCG-GACTTGGTG-TCGCAACTGGTCTG 1046 ||| ||||| || ||| |||||||| | || ||| | ||||||| | ||||| ||| || Sbjct 670 TGGAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTG-CTTGGTGCT-GCAACCGGTTTG 727 Query 1047 ATAAGTGCTTATGTCATCAAGAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTT 1106 |||||||| |||||||||||||| | ||||||||||||||||| || || ||||||||| Sbjct 728 ATAAGTGCGTATGTCATCAAGAAGTTATATTTTGGAAGGCACTCAACAGACCGAGAAGTT 787 Query 1107 GCCCTCATGATGCTTATGGCTTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGT 1166 ||||| |||||||||||||| |||||||| ||||||||||||||||| |||| ||||||| Sbjct 788 GCCCTTATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGT 847 Query 1167 GGTATCCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTC 1226 ||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct 848 GGTATTCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAACGTA 907 Query 1227 ACCGAGAGCTCAAGAATTACTACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAG 1286 || |||||||||||||||||||| |||||| ||||||| || ||||||||||| || ||| Sbjct 908 ACGGAGAGCTCAAGAATTACTACAAAGCATACCTTTGCAACATTGTCGTTTCTTGCGGAG 967 Query 1287 ACTTTTATTTTCCTCTACGTTGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTG 1346 || ||||||||| | || |||||||||||||| |||||||| || || ||||||| |||| Sbjct 968 ACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTG 1027 Query 1347 AGTGACAGC-CCGGGGACATCAGTT-GCAGTGAGCTCAATTCTAATGGGTCTAGTCATGC 1404 ||||||| | ||||| ||||| | | |||||||||||||| ||||||||||| ||||||| Sbjct 1028 AGTGACA-CACCGGGAACATC-GATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGC 1085 Query 1405 TTGGAAGAGCAGCTTTTGTCTTTCCTCTT-TCCTT-CTTATCAAACTTAGCCAAGAAGCA 1462 ||||||||||||| ||||||||||| || || || || ||| ||| ||||||||||| | Sbjct 1086 TTGGAAGAGCAGCATTTGTCTTTCCG-TTATCGTTTCT-ATCTAACCTAGCCAAGAAGAA 1143 Query 1463 TCAGAGCGAGAAAATCAGCATCAAGCA-GCAAGTTGTGATCTGGTGGGCTGGTCTAATGA 1521 || ||||||||||||| | | || || ||| |||||||| |||||| ||||||| |||| Sbjct 1144 CCAAAGCGAGAAAATCAACTTTAA-CATGCAGGTTGTGATTTGGTGGTCTGGTCTTATGA 1202 Query 1522 GAGGTGCTGTATCTATGGCTCTTGCCTACAATAAGTTTACAAGATCAGGGCACACAGAAT 1581 ||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||| | Sbjct 1203 GAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTTACAAGGGCCGGGCAAACAGA-T 1261 Query 1582 -TGCGCGGGAATGCAATCATGATTACCAGTACAATAACCGTCTGTCTTTTTAGCACCA-T 1639 | || ||||||||||||||||| |||||||| ||||||||||||||||||||||| | | Sbjct 1262 GTACGAGGGAATGCAATCATGATCACCAGTACGATAACCGTCTGTCTTTTTAGCAC-AGT 1320 Query 1640 GGTGTTTGGTATGCTAACCAAACCACTGATTAGATACCTAATGCCACACCAAAAAGCGAC 1699 ||||||||||||||| |||||||| || || || |||||| |||| ||||| || || | Sbjct 1321 GGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAA--CG-C 1377 Query 1700 CACCAGTACCACGAGTATGTTATCGGACGATAGCACTCCGAAATCAATCCACATTCCGCT 1759 ||||| | ||| |||||||| || || | ||| || ||||| ||||| || || | Sbjct 1378 CACCA---C---GAGCATGTTATCTGATGACAACACCCCAAAATCCATCCATATCCCTTT 1431 Query 1760 CCTCGATGGTGAACAGCTAGATTCATTTGAG--TTACCTGGGAGCCACCAGGACGTGCCA 1817 || || || | || ||||||| ||| || | |||| |||| | | ||||| Sbjct 1432 GCTAGACC---AAGA-CTC-ATTCATT-GAGCCTT-CA-GGGAACCAC-A--ATGTGCCT 1480 Query 1818 CGACCAAACAGCCTTCGAGGTTTCCTCATGCGCCCCACACGGACTGTCCACTATTACTGG 1877 || || | || | || || ||| | | || ||||| || || || || || |||||| Sbjct 1481 CGGCCTGATAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1540 Query 1878 AGACAGTTTGATGA-TGCCTTCATGCGTCCTGTGTTTGGTGGTCGCGGATTCGTTCCCTT 1936 ||||| |||||||| | |||||||||| || || ||||| ||||| || || || ||||| Sbjct 1541 AGACAATTTGATGACT-CCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGT-CCCTT 1598 Query 1937 T-GTCCCTGGTTCTCCGACTGAGAGAAGCAG-CCATGATCTTAGTAAA-CCTTGAGGAGA 1993 | |||||||||||||| |||||||||| | || |||||| ||||| ||| ||||| | Sbjct 1599 TCGTCCCTGGTTCTCCAACTGAGAGAAACCCTCC-TGATCTCAGTAAGGCCT-GAGGA-A 1655 Query 1994 AA 1995 || Sbjct 1656 AA 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80751319400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5