BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05060.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928085 jgi|Araly1|928085|scaffold_300542.1 2628 0.0
Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1 1301 0.0
> Ahg928085 jgi|Araly1|928085|scaffold_300542.1
Length=1636
Score = 2628 bits (1423), Expect = 0.0
Identities = 1562/1630 (96%), Gaps = 6/1630 (0%)
Strand=Plus/Plus
Query 88 AGCTTAAGAGTTTTGTGAAGATGGTCTTAGTGCTATACGAGACAGCGGCGGGGTTTGCCC 147
||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 1 AGCTTGAGAGTTTTGTGAAGATGGTCTTAGTGCTATTCGAGACAGCGGCTGGTTTTGCCC 60
Query 148 TCTTTAAAGTTAAAGATGAAGGAAAGATGGCTAACGTCGAGGATTTGTGTAAAGAGTTCG 207
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCTTTAAAGTGAAAGATGAAGGAAAGATGGCTAACGTTGAGGATTTGTGTAAAGAGTTCG 120
Query 208 ACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAAGTTTGACAATA 267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 ACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAAGTTTGACAACA 180
Query 268 CATCTGAAGCTCTCGAAGCTGTGGCTAAATTGCTGGAGGGAGCTCCAAGCAAAGGTCTGC 327
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 CATCTGAAGCTCTCGAAGCTGTGGCTAAGTTGCTTGAGGGAGCTCCAAGCAAAGGTCTGC 240
Query 328 GCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTGGCTGTGGCTGATTCAAAGCTTG 387
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 241 GCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTAGCTGTTGCTGATTCAAAGCTTG 300
Query 388 GGAATGTTATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGCTGTTATGGAGC 447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAATGTGATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGCTGTTATGGAGC 360
Query 448 TTCTACGTGGTGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGGGTGATCAAGACT 507
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTACGAGGAGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGGGTGATCAAGACT 420
Query 508 TGGCTCCTATGAGCTTGGGTCTGTCTCACAGTCTCGCCAGATATAAGCTAAAGTTTAGTT 567
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 421 TGGCACCTATGAGCTTGGGTCTGTCTCACAGTCTTGCTAGATATAAGCTAAAGTTTAGTT 480
Query 568 CTGACAAGGTGGATACCATGATTATCCAAGCTATTGGTCTGCTTGATGATCTTGACAAAG 627
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 481 CTGACAAGGTGGATACCATGATTATCCAAGCTATCGGTTTACTTGATGATCTTGACAAAG 540
Query 628 AGCTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCATTTTCCCGAGCTTG 687
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCATTTTCCCGAGCTTG 600
Query 688 CTAAGATCATATCAGACAATATCCTATATGCCAAATCTGTTAAATTGATGGGAAACCGAG 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 CTAAGATCATATCAGACAATATCCTATATGCCAAATCTGTTAAATTGATGGGAAACAGAG 660
Query 748 TTAATGCTGCTAAGCTAGACTTCTCCGAGATCTTAGCAGATGAAATTGAGGCAGATCTTA 807
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 661 TTAATGCTGCAAAGCTAGACTTCTCCGAGATCTTAGCGGATGAAATTGAGGCAGATCTCA 720
Query 808 AGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGACTTAGACTTGTTGCACATCC 867
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 AGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGACCTAGACTTGTTGCACATCC 780
Query 868 GTGAACTCTGTGACCAGGTTCTCTCTCTTTCTGAGTACAGAGCTCAGCTTTACGATTACC 927
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGAACTCTGTGACCAGGTTCTTTCTCTTTCTGAGTACAGAGCTCAGCTTTACGATTACC 840
Query 928 TAAAGAGCAGAATGAACACTATTGCTCCCAATCTGACTGCCCTGGTAGGAGAGCTTGTTG 987
| |||||||||||| |||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 841 TGAAGAGCAGAATGCACACAATTGCTCCCAATCTGACTGCCCTTGTTGGAGAGCTAGTTG 900
Query 988 GTGCTCGTCTTATTTCCCATGGAGGTAGTTTATTGAACCTCTCCAAGCAACCTGGGAGCA 1047
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGCCCGTCTGATTTCTCATGGAGGTAGTTTATTGAACCTCTCCAAGCAACCTGGGAGCA 960
Query 1048 CGGTTCAGATACTCGGAGCCGAAAAAGCTCTCTTTAGAGCTCTTAAGACAAAACACGCCA 1107
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGATTCAGATACTCGGAGCTGAAAAAGCTCTCTTTAGAGCTCTTAAGACAAAACACGCCA 1020
Query 1108 CACCCAAGTACGGTTTGATTTTTCACGCATCTCTGGTTGGTCAAGCAGCACCAAAGCACA 1167
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1021 CACCCAAGTACGGTTTGATTTACCACGCATCTGTGGTTGGTCAAGCAGCACCAAAGCACA 1080
Query 1168 AGGGAAAGATCTCGCGGTCTTTAGCTGCTAAAACTGTTCTTGCTATTAGGGTTGATGCTC 1227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGGGAAAGATCTCGCGGTCATTAGCTGCTAAAACTGTTCTTGCTATTAGGGTTGATGCTC 1140
Query 1228 TTGGTGATAGCCAAGATAACACTATGGGCCTTGAAAACCGAGCTAAGCTTGAAGCGCGGT 1287
|||||||| |||| |||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1141 TTGGTGATGGCCAGGATAGCACTATGGGACTTGAGAACCGAGCTAAGCTTGAAGCGCGGT 1200
Query 1288 TGAGAAATCTTGAAGGAAAAGATTTAGGTCGTCTGTCTGGTTCATCTAAAGGCAAACCTA 1347
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1201 TGAGAAATCTTGAAGGAAAAGATTTAGGACGTCTGTCTGGTTCAGCTAAAGGCAAACCTA 1260
Query 1348 AGATTGAAGTCTATAACAAGGATAAAAAGATGGGATCAGGCGGTCTTATCACTCCTGCTA 1407
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 AGATTGAAGTCTATAACAAGGATAAAAAGATGGGATCTGGCGGTCTTATCACTCCTGCTA 1320
Query 1408 AGACTTACAACACTGCTGCAGATTCTCTTCTTGGGGAAACCTCAGCTAAATCTGAGGAGC 1467
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1321 AGACTTACAACACTGCTGCAGATTCTCTTCTTGGGGAATCCTCGGCTAAATCTGAGGAGC 1380
Query 1468 CATCaaagaagaaagataagaaaaagaagaagaaggtagaagaagagaaacccgaagagg 1527
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1381 CATCGAAGAAGAAAGATAAGAAAAAGAAGAAGAAGGTAGAAGAAGAGGAACCCGAAAAGG 1440
Query 1528 aagagccatcagagaaaaagaagaagaagaaagctgaagcagaaactgaagcCGTAGTAG 1587
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1441 AGGAGCCATCAAAGAAGAAGAAGAAGAAGAAAGCTGAAGCAGAAACTGAAGCCGTAG-AG 1499
Query 1588 AGGTTGCAaaggaggagaagaagaagaataagaagaagagaaagcatgaggaagaagaaa 1647
| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1500 -G-TTGCAAAGGAGGAGAAGAAGAACAA---GAAGAAGAGAAAGCATGAGGAAGAAGAAA 1554
Query 1648 caacggagacaccagccaagaagaaggataagaaagagaagaaaaagaagagtaaggact 1707
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1555 CAACTGAGACACCAGCCAAGAAGAAAGATAAGAAAGAGAAGAAAAAGAAGAGCAAGGACT 1614
Query 1708 gagggagaga 1717
||||||||||
Sbjct 1615 GAGGGAGAGA 1624
> Ahg489610 jgi|Araly1|489610|fgenesh2_kg.6__2744__AT5G27120.1
Length=1767
Score = 1301 bits (704), Expect = 0.0
Identities = 1312/1596 (82%), Gaps = 79/1596 (5%)
Strand=Plus/Plus
Query 141 TTTGCCCTCTTTAAAGTTA-AAGATGAAGGAAAGATGGCTAACGTCGAGGAT-TTGTGTA 198
||||| ||||||||| || ||||||||||||| | |||| || |||||| | | |||
Sbjct 98 TTTGCAATCTTTAAAG-TATTAGATGAAGGAAAGCTCTCTAATGTTGAGGATATCG-GTA 155
Query 199 AAGAGTTC--GACACTCCAGACTCAGCACGAAAGATGGTTAAGCTAAAAGCTTTTGAGAA 256
| |||||| ||| | || | ||||| |||||||||||||||||| ||||||||| ||
Sbjct 156 ATGAGTTCTTGAC-C-GCAAAGTCAGCCCGAAAGATGGTTAAGCTAGTAGCTTTTGACAA 213
Query 257 GTTTGACAATACATCTGAAGCTCTCGAAGCTGTGGCTAAATTGCTGGAGGGAGCTCCAAG 316
||||||||| ||| |||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 214 GTTTGACAACACAGCTGAAGCTCTTGAAGCAGTGGCTAAATTGCTTGAGGGAACTCCAAG 273
Query 317 CAAAGGTCTGCGCAAGTTTTTGAAAGCTAATTGTCAAGGTGAAACCTTGGCTGTGGCTGA 376
||| ||||| |||||||| ||||| ||||| ||| ||||||||||||||||| |||||
Sbjct 274 CAAGGGTCTACGCAAGTTCTTGAAGGCTAACTGTGTTGGTGAAACCTTGGCTGTTGCTGA 333
Query 377 TTCAAAGCTTGGGAATGTTATCAAGGAGAAACTGAAAATTGATTGCATTCACAACAATGC 436
||| |||||||| ||| | |||||||||||||||||||| || || |||||||||||||
Sbjct 334 TTCTAAGCTTGGAAATATCATCAAGGAGAAACTGAAAATAGACTGTGTTCACAACAATGC 393
Query 437 TGTTATGGAGCT-TCTACGTGGTGTTAGAAGTCAGTTTACTGAACTCATATCTGGGTTGG 495
|||||||||||| | |||| ||||||||||| ||| | | |||||| |||||||| ||||
Sbjct 394 TGTTATGGAGCTGT-TACGAGGTGTTAGAAGCCAGCTAAGTGAACTTATATCTGGATTGG 452
Query 496 GTGATCAAGACT-TGGCTCCTATGAGCTT-GGGTCTGTCTCACAGTCTCGCCAGATATAA 553
| ||| |||| | | ||||| |||||||| |||| |||||||||| || |||||||||||
Sbjct 453 GAGATAAAGA-TCTAGCTCCAATGAGCTTGGGGT-TGTCTCACAGCCTTGCCAGATATAA 510
Query 554 GCTAAAGTTTAGTTCTGACAAGGTGGATACCATGATTATCCAAGCTATTGGTCTGCTTGA 613
|||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 511 ACTAAAGTTCAGTACCGACAAGGTGGATACTATGATAATCCAAGCTATTGGTCTGCTTGA 570
Query 614 TGATCTTGACAAAGAGCTGAACACATACGCCATGAGGGTTAGAGAATGGTATGGATGGCA 673
|||||||||||||||||| ||||| ||||| ||||||||| | ||||||||||| |||||
Sbjct 571 TGATCTTGACAAAGAGCTCAACACGTACGCTATGAGGGTTCGTGAATGGTATGGTTGGCA 630
Query 674 TTTTCCCGAGCTTGCTAAGATCATATCAG-ACAATATCCTATATGCCAAATCTGTTAAA- 731
|||||| ||||||||||||||| || ||| |||||||| |||||||||| ||||||||
Sbjct 631 TTTTCCTGAGCTTGCTAAGATCGTA-CAGGACAATATCTTATATGCCAAGGCTGTTAAAC 689
Query 732 TTGATGGGAAACCGAGTTAATGCTGCTAAGCTAGACTTCTCCGAGATCTTAGCAGATGAA 791
|| ||||| || || ||||||||||| |||||||||||||| ||||| || || ||||||
Sbjct 690 TT-ATGGGGAATCGGGTTAATGCTGCAAAGCTAGACTTCTCTGAGATATTGGCTGATGAA 748
Query 792 ATTGAGGCAGATCTTAAGGACGCAGCTGTGATATCCATGGGAACAGAAGTCAGTGAC-TT 850
|||| ||||| || || || || ||||||||||| |||||||| ||||| || ||| ||
Sbjct 749 GTTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAGTAAGCGACCTT 808
Query 851 AGACTTGTTGCACATCCGTGAACTCTGTGACCAGGTTCTCTCTCTTTCTGAGTACAGAGC 910
|| || ||||||||||| |||||||||||||||||||| |||||| |||||||||||||
Sbjct 809 -GATTTATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCTGAGTACAGAGC 867
Query 911 TCAGCTTTACGATTACCTAAAGAGCAGAATGAACACTATTGCTCCCAATCTGACTGCCCT 970
|||||||| || ||| | ||||||||||||||||| ||||| || ||||| |||||||
Sbjct 868 TCAGCTTTTTGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAATCTTTCTGCCCT 927
Query 971 GGTAGGAGAGCTTGTTGGTGCTCGTCTTATT-TCCCATGGAGGTAGTTTATTGAACCTCT 1029
|| || ||||| || |||||||| |||| | || ||||| |||||||| ||||||||
Sbjct 928 TGTCGGGGAGCTAGTCGGTGCTCG-CTTAATATCTCATGGTGGTAGTTTGTTGAACCTGG 986
Query 1030 CCAAGCAACCTGGGAGCACGGTTCAGATACTCGGAGCCGAAAAAGCTCTC-TTTAGAGCT 1088
| ||||||||||| ||||| ||||||| || ||||| |||||||| || ||||||||
Sbjct 987 CAAAGCAACCTGGAAGCACAATTCAGATTCTTGGAGCTGAAAAAGC-CTTATTTAGAGCC 1045
Query 1089 CTTAAGACAAAACACGCCACACCCAAGTACGGTTTGATTTTTC-ACGCATCTCTGGTTGG 1147
|||||||| || |||||||| || ||||| ||| | | ||| | |||||||| ||||| |
Sbjct 1046 CTTAAGACCAAGCACGCCACTCCAAAGTATGGTCT-ACTTTACCACGCATCTGTGGTTTG 1104
Query 1148 TCAAGC-AGCACCAAAGCACAAGGG-AAAGATCTCGCGGTCTTTAGCTGCTAAAA-CTGT 1204
||| | | |||||||| ||||||| ||| || || ||||| |||||||| |||| ||||
Sbjct 1105 CCAAACTA-CACCAAAGAACAAGGGTAAA-ATTTCACGGTCATTAGCTGC-AAAAGCTGT 1161
Query 1205 TCTTGCTATTAGG-GTTGATGCTCTTGGTGATAGCCAAGATAACACTATGGGCCTTGAAA 1263
||||||||| | || ||||| ||||||||| ||||||| ||||||||||| | ||||
Sbjct 1162 TCTTGCTATCCGTTGT-GATGCCCTTGGTGATGGCCAAGACAACACTATGGGAGTGGAAA 1220
Query 1264 ACCGAGCT-AA-GCTTGAAGCGCGGTTGAGAAATCTTGAAGGAAAAGATTTAGGTCGTCT 1321
|||| || || ||||||||| |||||||||| ||| ||||||||||||||||| |||||
Sbjct 1221 ACCG--CTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGACGTCT 1278
Query 1322 GTCTGGTTCATCTAAAGGCAAACCTAAGATTGAAGTCTATAACAAGGATAAAAAGATGGG 1381
|||||| ||| ||||||||||||| ||||||||||| ||| |||| |||||||||| ||
Sbjct 1279 GTCTGGCTCAGCTAAAGGCAAACCAAAGATTGAAGTTTATGACAAAGATAAAAAGAAAGG 1338
Query 1382 ATCAGGCGGTCTTATCACTCCTGCTAAGACTTACAACACTGCTGCAGATTCTCTTCTTGG 1441
||| || ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1339 ATCCGGAGGTCTGATCACTCCTGCTAAGACTTACAACACAGCTGCAGACTCTCTTCTTC- 1397
Query 1442 GGAAAC-CTCA--GCTAAAT-CTGAGGA-GCCATCaaaga-a-gaaagataagaa-aa-a 1492
|||| | || | | || | ||| | | ||||||| | |||||| || || || |
Sbjct 1398 --AAACTCCCACAG-TGGATTCAGAGAACGGTGTCAAAGAGAAGAAAGACAAAAAGAAGA 1454
Query 1493 -gaagaagaagg-t-a-gaagaaga-gaaacccgaagag-gaagagccatcaga-gaaaa 1545
||||||||||| | | || || || ||| ||| || | || ||||| || || ||| |
Sbjct 1455 AGAAGAAGAAGGCTGATGATGAGGAAGAA-CCCAAA-ACTGAGGAGCCTTC-GAAGAAGA 1511
Query 1546 ag---aagaagaagaaagctgaagcagaaactgaagcCGTAGTAGAGGTTGCAaaggagg 1602
|| |||||||||||| | |||||||| ||||| ||| | |||| ||||||| |
Sbjct 1512 AGTCGAAGAAGAAGAAAACAAAAGCAGAACCTGAAACCGCCGAAGAGCCTGCAAAG-A-- 1568
Query 1603 agaagaagaagaataagaagaagagaaagcatgaggaagaagaaacaacggagacaccag 1662
|| || ||| || | ||||| || ||| || |||||||| ||||| || | | || |
Sbjct 1569 AG--GA-GAA-AA-A-GAAGA-GA-AAA-CACGAGGAAGAGGAAAC--CGAA-ATGCCTG 1616
Query 1663 ccaagaagaaggataagaaagagaagaaaaagaaga 1698
| ||||||||||| |||| |||||||| |||||||
Sbjct 1617 CTAAGAAGAAGGAAAAGAGTGAGAAGAAGAAGAAGA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5