BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05165.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477802 jgi|Araly1|477802|fgenesh2_kg.3__503__AT3G05165.2 1823 0.0
> Ahg477802 jgi|Araly1|477802|fgenesh2_kg.3__503__AT3G05165.2
Length=1578
Score = 1823 bits (987), Expect = 0.0
Identities = 1076/1119 (96%), Gaps = 6/1119 (1%)
Strand=Plus/Plus
Query 13 CAA-AAGATTTCTTGGGAGAAAATA--AGGTGGATTGAAGGATTAGTCTTTAGGAATGGT 69
||| |||||||||||||| |||||| | | || |||||||||| || | || ||||||
Sbjct 62 CAAGAAGATTTCTTGGGAAAAAATATTAAGAGGGGTGAAGGATTAATCGTAAGAAATGGT 121
Query 70 GGTGGAGGAGGAGAATAGAAGCATGGAGGAAGGACTTCTTCAGCATCAAAACGACAGAGA 129
||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 122 GGT---GGAGGAGAATAGAAGCATGGAGGAAGGACTTCTTCGGCATGGAAACGACAGAGA 178
Query 130 TGATCGTCGTATCACAGCTTGTGTCATCCTCAGCACTTTTGTCGCTGTTTGTAGTGCCTT 189
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TGATCGTCGTATCACTGCTTGTGTTATCCTCAGCACTTTTGTCGCTGTTTGTAGTGCCTT 238
Query 190 CAGCTACGGATGTGCCGCTGGTTATACTTCAGGCGCTGAGACTGCTATCATGAAGGAGTT 249
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGCTATGGATGTGCCGCTGGTTATACTTCAGGCGCTGAGACTGCTATCATGAAGGAGTT 298
Query 250 AGACCTTTCTATGGCACAATTTTCAGCGTTTGGCTCCTTTCTGAATGTGGGAGGTGCGGT 309
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 299 AAACCTTTCTATGGCACAATTTTCAGCGTTTGGCTCCTTTATGAATGTGGGGGGTGCGGT 358
Query 310 GGGGGCCTTGTTCAGCGGTCAATTGGCAGTCATCCTCGGCAGAAGACGAACGTTGTGGGC 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGGGGCCTTGTTCAGCGGTCAATTGGCAGTCATCCTCGGCAGAAGACGAACGTTGTGGGC 418
Query 370 ATGCGATTTTTTCTGCGTTTTTGGCTGGCTCTCCATTGCTTTCGCAAAGAATGTCTTCTG 429
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGCGATTTTTTCTGCATTTTTGGCTGGCTCTCCATTGCTTTCGCAAAGAATGTCTTCTG 478
Query 430 GCTGGACTTGGGAAGAATTTCCTTGGGCATAGGAGTCGGCTTGATTAGCTACGTGGTCCC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCTGGACTTGGGAAGAATTTCCTTGGGCATAGGAGTCGGCTTGATTAGCTACGTGGTCCC 538
Query 490 AGTCTATATTGCGGAAATCACTCCAAAACATGTTCGTGGCGCATTTACTGCTTCAAACCA 549
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TGTCTATATTGCGGAAATCACTCCAAAACATGTTCGTGGCGCATTTACTTCTTCAAACCA 598
Query 550 GCTTCTTCAAAACAGTGGAGTTTCCCTGATTTAtttttttGGGACTGTAATTAATTGGCG 609
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 GCTTCTTCAAAACAGTGGAATTTCCCTAATTTATTTTTTTGGGACTGTAATTAATTGGCG 658
Query 610 GGTTATGGCCGTTATAGGTGCAATTCCATGCATCCTTCAAACGATCGGTATATTTTTTAT 669
|||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 659 GGTTCTGGCTGTTATAGGTGCAATTCCATGCATCCTTCAAATGATCGGTATATTTTACAT 718
Query 670 ACCGGAATCTCCAAGATGGCTGGCTAAAATCCGTTTAAGTAAAGAAGTAGAAAGTTCTTT 729
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 719 ACCGGAATCTCCAAGATGGCTGGCTAAAATCGGTTTAGGCAAAGAAGTAGAAAGTTCTTT 778
Query 730 GCATCGACTTAGAGGGAAAGATACTGATGTTTCAGGTGAAGCAGCTGAAATTCAGGTTAT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCATCGACTTAGAGGGAAAGATACTGATGTTTCAGGTGAAGCAGCTGAAATTCAGGTTAT 838
Query 790 GACAAAAATGCTTGAAGAAGATTCAAAGTCTAGTTTCTCTGACATGTTTCAGAAGAAGTA 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GACAAAAATGCTTGAAGAAGATTCAAAGTCTAGTTTCTCTGACATGTTTCAGAAGAAGTA 898
Query 850 CAGACGAACTCTTGTGGTTGGAATTGGTTTAATGTTGATACAACAATTATCTGGAGCTAG 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TAGACGAACTCTTGTGGTTGGAATTGGTTTAATGTTGATACAACAATTATCTGGAGCTAG 958
Query 910 CGGTATCACATATTATTCAAATGCCATATTTAGAAAAGCTGGCTTTTCAGAGAGACTTGG 969
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 TGGTATCACATATTATTCAAATGCCATATTTAGGAAAGCTGGCTTTTCAGAGAGACTTGG 1018
Query 970 ATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTTGGTTGGTCTGATTCTTGTGGA 1029
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ATCAATGATATTTGGTGTGTTCGTGATCCCAAAAGCTTTGGTTAGTCTGATTCTTGTGGA 1078
Query 1030 TAGATGGGGAAGACGACCACTCCTATTGGCTTCTGCTGTTGGAATGTCCATCGGATCCTT 1089
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 TAAATGGGGAAGACGACCACTCCTATTGGCTTCTGCTATTGGAATGTCCATCGGATCCTT 1138
Query 1090 GCTTATTGGAGTTAGCTTCACGTTACAGCAAATGAATGT 1128
|||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCTTATTGGAGTTAGCTTCACGTTACAGCAAATGAATGT 1177
Score = 505 bits (273), Expect = 5e-142
Identities = 376/421 (89%), Gaps = 25/421 (6%)
Strand=Plus/Plus
Query 1172 GTCTACTTCGGATGTTTTGCATTCGGTATAGGAGGGCTACCTTGGGTCATTATGTCTGAG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GTCTACTTCGGATGTTTTGCATTCGGTATAGGAGGGCTACCTTGGGTCATTATGTCTGAG 1235
Query 1232 ATCTTTCCGATAAATATAAAAGTTTCAGCAGGAACAATTGTAGCATTAACATCATGGACT 1291
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1236 ATCTTTCCGATAAATATAAAAGTTTCAGCAGGAACAATAGTAGCATTAACATCATGGACT 1295
Query 1292 AGTGGGTGGTTCGTGAGTTACGCTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACA 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 AGTGGGTGGTTCGTGAGTTACGCTTTCAACTTTATGTTTGAATGGAGCGCACAAGGAACA 1355
Query 1352 TTTTACATATTTGCGGCTGTCGGAGGAATGTCATTCATTTTTATTTGGATGCTCGTACCG 1411
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1356 TTTTACATATTTGCGGCTGTCGGAGGAATGTCATTGATTTTTATTTGGATGGTCGTACCG 1415
Query 1412 GAAACCAAAGGACAATCATTGGAAGAATTACAAGCTTCGCTTACGGGGACATCCTAAAT- 1470
|||||||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||
Sbjct 1416 GAAACCAAAGGACAGTCACTGGAAGAGTTGCAAGCTTCGCTTACCGGGACAACCTAAATT 1475
Query 1471 GCACA-T-----TTATATTGTAATATACTATTAATTTTGTTTGGTAAAAAGATAAAATTT 1524
| | | | ||| ||||||||||| | | |||||||||| | | | ||
Sbjct 1476 GTAAAATACACGTTAAATTGTAATATA-T-T-AATTTTGTTTA-T-------TCA--TT- 1521
Query 1525 ATTTTCTGTTGTCAGTCGCATTGCAAATAATAAATGTATTTTGTAACATTATTTGCATAT 1584
|| || ||| ||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 1522 AT---CTATTGGCAGTCGCATTGCAAATAATTG-TGTATTTTATAATATTATTTGCATAT 1577
Query 1585 T 1585
|
Sbjct 1578 T 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5