BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05200.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477807 jgi|Araly1|477807|fgenesh2_kg.3__508__AT3G05200.1 2141 0.0
> Ahg477807 jgi|Araly1|477807|fgenesh2_kg.3__508__AT3G05200.1
Length=1661
Score = 2141 bits (1159), Expect = 0.0
Identities = 1352/1441 (94%), Gaps = 29/1441 (2%)
Strand=Plus/Plus
Query 295 TATCTCTTCTTTATGAATCTTCAAATGTCtttttt--tACGCTATAAACTCACTTTCTTC 352
||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 245 TATCTCTTC-TTCTGAATCTTCAAATGTCTTTTTTAGTACGCTATAAACTCGCTTTCTTC 303
Query 353 TCCTCCAAGAGCCAAATAAACACACaaaaaaaaaCTCAAAATCATGAGAAGCTCCGATCA 412
| |||||||||||||| |||||| |||||||||| |||| ||||||||||||||||||
Sbjct 304 TTCTCCAAGAGCCAAAAAAACAC-CAAAAAAAAA---AAAA-CATGAGAAGCTCCGATCA 358
Query 413 TATGGCGTTTGCCGGCGTTTTGCCGATTGTTTTCTTGCTTATATTATCATCAGCGGATCT 472
|| | ||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 359 TACGCCGTTTTCCGGCGTTTTGCCGATTGTTTTATTTCTTATATTATCATCAGCGGATCT 418
Query 473 AGCAGCGAGTCAATCACAGCCCGGTCCAACAAATCAACCGTATAACTACGGCAGACTAAG 532
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 419 AGCGGCGAGTCAATCACAGCCCGGTCCAGCAAATCAACCGTATAACTACGGCAGGCTAAG 478
Query 533 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 538
Query 593 CTCTATCTACTTCCGTCACTGCTCAGGCGTACCAGACGCCGGTGTTTCTCCAGCTGGTGG 652
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 539 CTCCATCTACTTCCGTCACTGCTCCGGCGTACCAGACGCCGGCGTTTCTCCAGCTGGTGG 598
Query 653 AGCTAGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGTTTCAGTTGTCGA 712
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 TGCTCGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGCTTCAGTTGTCGA 658
Query 713 GACTTTTCCTACGTTCTTGTACTCAGATGTGAAAACGCAGAAGCTTGGTAAAGGAGAGTT 772
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 659 GACTTTTCCTACGTTCTTGTACTCTGATGTCAAAACGCAGAAGCTTGGCAAAGGAGAGTT 718
Query 773 AGAGTGTGCGATATGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 832
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGAGTGTGCGATTTGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 778
Query 833 GTGTGATCACGTGTTTCATCCGCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 892
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCGATCACGTGTTTCACCCTCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 838
Query 893 TCCCGTTTGCAGAGCGAATCTTGCTGAACAGGTAGCTGAAGGTGAGTCAGTTGAACCGGG 952
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 839 TCCTGTTTGCAGAGCGAATCTTGCTGAACAGGTTGCTGAAGGTGAATCGGTTGAACCGGG 898
Query 953 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTGGTTAC 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTTATTAC 958
Query 1013 TGCACCGGTACCGGAACAATTGGTGACTAGTGAAGTCGATTCGAGGAGATTACCTGGTGT 1072
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 959 TGCTCCGGTACCGGAACAATTGGTGACGAGTGAAATCGATTCGAGGAGATTACCTGGAGT 1018
Query 1073 ACCGGTGGATCTTAAAA-GAGTTAAATTCTCGAGATCGCATACGACGGGACATTCGGTGG 1131
|||| ||||| |||||| |||| |||||||||||||||||||| || |||||||||||||
Sbjct 1019 ACCGATGGAT-TTAAAACGAGTCAAATTCTCGAGATCGCATACCACCGGACATTCGGTGG 1077
Query 1132 TTCAACCGGGAGAATGTACCGAACGGTTTACTCTTCGGTTACCGGAAGATGTGAGGAAGA 1191
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 TTCAACCGGGAGAATGTCCCGAACGGTTTACTCTTCGGTTACCGGAAGATGTAAGGAAGA 1137
Query 1192 GGATAATGAAGGATTGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1251
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGATAATGAGGGAATGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1197
Query 1252 GGAGTTCGAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1311
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGAGTTCAAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1257
Query 1312 TTCGTAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1371
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCCGGAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1317
Query 1372 CTACCGGTAGCGTTCGAGCCAGTGCTGTACCGAATTCAACCGGTAGTGATTCGGTACGTG 1431
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1318 CTACCGGTAGCGTTCGAGCCAACGCTGTACCGAATTCAACCGGTGGTGATTCGGTACGTG 1377
Query 1432 CAGGAGACCGGTGGGCTTTTCTTAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1378 CAGGAGACCGGTGGGCTTTTCTAAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1437
Query 1492 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGACCGGTG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1438 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGGCCGGTG 1497
Query 1552 CAAGTGGCTCAACTAGCGGTTCGGTGAGATTACCGGTTTAGTTGACttttcttttctca- 1610
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1498 CAAGTGGCTCAACTAGCGGTTCGATGAGATTACCGGTTTAGTTGACTTTTCTTTTCTCAC 1557
Query 1611 -tctttttcatttgtttttgtttgggattgttgataaatacgcaaatacattttcaattt 1669
| |||||| ||| || | |||||||||||| |||| | | |||| |||||||||||||
Sbjct 1558 ATATTTTTCGTTT-TTAT-GTTTGGGATTGTCGATATACAAGCAA-TACATTTTCAATT- 1613
Query 1670 tttaattgAATTATCCTTGTTTTGTTTAAAATTCTCTGTAACGTACATATGAAGTCAGAT 1729
| || | ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1614 ---A-TT-------C-TTGTTTTGTTTAAAATT-TCTGTAACGTACATATAAAGTCAGAT 1660
Query 1730 C 1730
|
Sbjct 1661 C 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5