BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05327.1 Length=956 Score E Sequences producing significant alignments: (Bits) Value Ahg477821 jgi|Araly1|477821|fgenesh2_kg.3__522__AT3G05327.1 1402 0.0 > Ahg477821 jgi|Araly1|477821|fgenesh2_kg.3__522__AT3G05327.1 Length=955 Score = 1402 bits (759), Expect = 0.0 Identities = 898/963 (93%), Gaps = 17/963 (2%) Strand=Plus/Plus Query 2 CTCTCTCTCAAAGAAAAGAATCTAAAGTAGCAAAACTTTAAC-AAAAGAGCTTCAAATTT 60 |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| ||| Sbjct 1 CTCTCTCTCAAAGAAAAGAATCTAAAGTGGCAAAACTTTAACAAAAAAAGCTTCAACTTT 60 Query 61 GCTTCGGACCTTCCATTTACACAAGC-TCCTACCTCAAGC----aaaaaaaaCAATCAGA 115 |||||| ||||||||||||| | | ||||||||||||| ||||||||||| |||| Sbjct 61 GCTTCGCTTCTTCCATTTACACCA-CTTCCTACCTCAAGCAAAAAAAAAAAACAACCAGA 119 Query 116 GAGAAGATCTAAAGCTCTCTCAAACAATTCCAACACAAAAATGGAAACTTCTAGAAACTC 175 |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 120 GAGATGATCTAAAGCTCTCTCAATCAATTCTAACACAAAAATGGAAACTTCTAGAAACTC 179 Query 176 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCTGATCAGCCTCCTGA 235 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCAGATCAGCCTCCTGA 239 Query 236 TTCTACCCCTCCTCGAGTCATAACCCTTCTCGCTTCTACCCTCGAGAAGATGATTCAGAA 295 |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 240 TTCTACCCATCCTCGAGTCATAACCCTTCTCGCTTCTATCCTTGAGAAGATGATTCAGAA 299 Query 296 GAACaaaaaaaaaTTCCACACAAGACACAACAAGGCTGATGAGATCACTATGTTCCATGG 355 |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 300 GAACAAAAAACCATTCCACATAAGACACAACAAGGATGATGAGATCACTATGTTCCATGG 359 Query 356 CTCAAAAGCACCATCGTT-AAGCATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 414 |||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 360 CTCAAAAGCACCATCGATGAA-CATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 418 Query 415 AGTGTAGCCCTGTGTGTTTCGTTGCAGCTTTTGCCTACATCCTTAGATATCTACAGAGAC 474 |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 419 AGTGTAGCCCTGCGTGCTTCGTTGCAGCTTTTGCCTACATCCTTAGGTATCTACAGAGAC 478 Query 475 CAGAGGCTACCAGTACGGCTCGTCGTCTCACATCACTCAACGTTCATCGCCTTCTCATCA 534 |||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| | Sbjct 479 CAGAGGCTACAAGTAAGGATCGTCGTCTCACATCACTCAACGTTCATCGTCTTCTCATTA 538 Query 535 CCAGTCTCTTGGTCGCAGCAAAATTCTTGGAACGCCAGTGTTATAACAACGCATATTATG 594 ||||| ||||||| ||||| || |||||||| ||| |||||||||||||||||||||||| Sbjct 539 CCAGTTTCTTGGTAGCAGCCAAGTTCTTGGACCGCAAGTGTTATAACAACGCATATTATG 598 Query 595 CAAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGGTTG 654 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 599 CGAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGTTTA 658 Query 655 ATGTTGATTTCAGGCTATATATTACAACGGAGACTTTCGAGAAACACTGTCTCATGTTGC 714 || |||||||||| ||| | ||||||||||||||||| ||| |||||||||||||||||| Sbjct 659 ATATTGATTTCAGACTAAACATTACAACGGAGACTTTTGAGGAACACTGTCTCATGTTGC 718 Query 715 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGTTCTTGGAGAGATAGCTT 774 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 719 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGCTCTTGGAGAGATAGCTT 778 Query 775 GTAGCTGCCAAGCGATTTGATATAGCAAAACTCAAAAGACGGGGaaaaaaa-C-ATTGGT 832 |||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct 779 GTAGCTGCCAAGCGATTTGATATAACAAAACTCAAAAGA-GGGGAAAAAAAGCCATTGGT 837 Query 833 TAGATCTTATTTTCTTCAGTTTATTGTCAAACTAATTATGTGTTTTGTCATGAGCACAAG 892 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | | Sbjct 838 TAGATCTTCTTTTCTTCAGTTTATTGTCAAACTAAT---GTGTTTTGTCATGAGCA-A-G 892 Query 893 AACTAAAATATATTTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AACTAAAATCTAATTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952 Query 953 CTG 955 ||| Sbjct 953 CTG 955 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35492435727 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5