BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05350.1
Length=2297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928125 jgi|Araly1|928125|scaffold_300582.1 2724 0.0
Ahg928122 jgi|Araly1|928122|scaffold_300579.1 268 1e-70
Ahg928123 jgi|Araly1|928123|scaffold_300580.1 248 1e-64
> Ahg928125 jgi|Araly1|928125|scaffold_300582.1
Length=1680
Score = 2724 bits (1475), Expect = 0.0
Identities = 1618/1687 (96%), Gaps = 10/1687 (1%)
Strand=Plus/Plus
Query 490 TTAAACTCTAGTTGGATTCTCATGCGGGCTGGTAATCCGGGAGTCCCCACGGCGAGTGAA 549
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1 TTAAACTCTAGTTGGATTCTCATGCGTGCTGGTAATCCGGGAGTCCCCACGGCAAGTGAA 60
Query 550 TGGATAGCTGATGTTTTGGCGCCTGGTGGAAGAGTTGGTATTGACCCTTTCCTTTTTTCC 609
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGTAGCTGATGTTTTGGCTCCTGGTGGAAGAGTTGGTATTGACCCTTTCCTTTTTTCC 120
Query 610 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCAAAGAAGAATCATGAGTTGGTTTAC 669
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCGAAGAAGAATCATGAGTTGGTTTAC 180
Query 670 TTGTACAATGTAAATCTTGTGGATGAGATATGGAAGGACTCAAGGCCAAAGCCTCCAAGC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTACAATGTAAATCTTGTGGATGAGATATGGAAGGACTCAAGGCCAAAGCCTCCAAGC 240
Query 730 AGACAAATAAGGATACATGACTTGAAGTATGCTGGTTTAGATGTGGCCTCGAAATTGTTG 789
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 AAACAAATAAGGATACATGACTTGAAGTATGCTGGTGTAGATGTGGCCTCGAAATTGTTG 300
Query 790 TCTTTGAGGAACCAAATTATGGATGCTGGCACATCTGCCATTGTAATATCCATGCTTGAT 849
||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCTCTGAGGAATCAAATTATGGATGCTGGCGCATCTGCCATTGTAATATCCATGCTTGAT 360
Query 850 GAGATTGCATGGGTGCTTAATCTGAGAGGGAGCGATGTTCCACATTCACCTGTAATGTAC 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGATTGCATGGGTGCTTAATCTGAGAGGGAGCGATGTTCCACATTCACCTGTAATGTAT 420
Query 910 GCATATCTGATTGTAGAGGTTGACCAAGCCCAACTTTTTGTAGATAATTCTAAAGTAACG 969
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 421 GCATATCTGATTGTAGAGGTTGACCAAGCCCAACTCTTTGTAGATAATTCTAAAGTATCG 480
Query 970 GTGGAGGTGAAAGATCATTTGAAAAACGCAGGGATCGAACTTAGACCTTACGATTCCATT 1029
| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 481 GCGGAGGTGAAAGATCATTTGAAAAACGCACGGATCGAACTTAGACCATACGATTCCATT 540
Query 1030 CTTCAAGGAATAGATAGTTTGGCAGCACGAGGAGCTCAGCTCTTGATGGATCCATCAACC 1089
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CTTCAAGGAATAGATAGTCTGGCAGAACGAGGAGCTCAGCTCTTGATGGATCCATCAACC 600
Query 1090 CTCAACGTAGCTATCATTAGTACCTACAAATCTGCCTGTGAAAGATATTCGAGGAATTTT 1149
||||||||||||||||||||||||||||||||||| ||||||||||| | | |
Sbjct 601 CTCAACGTAGCTATCATTAGTACCTACAAATCTGCGTGTGAAAGATA--C-------TCT 651
Query 1150 GAAAGCGAAGCCAAAGTTAAGACAAAGTTTACTGATAGCTCCAGCGGATATACTGCCAAT 1209
||||| |||| ||||| ||||| ||||||||||||||||||| |||| | |||||||||
Sbjct 652 GAAAGTGAAGACAAAGCTAAGATGAAGTTTACTGATAGCTCCAACGGACAGACTGCCAAT 711
Query 1210 CCTTCTGGTATTTACATGCAATCTCCTATTTCGTGGGCAAAGGCCATTAAAAATGATGCT 1269
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 712 CCCTCTGGTATTTACATGCAATCTCCTATTTCTTGGGCAAAGGCCATTAAAAATGATGCC 771
Query 1270 GAGCTAAAGGGAATGAAGAATTCTCACTTGAGAGATGCTGCTGCCCTAGCTCATTTCTGG 1329
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 772 GAGCTACAGGGAATGAAGAACTCTCACTTGAGAGATGCTGCTGCTCTAGCTCATTTCTGG 831
Query 1330 GCTTGGCTGGAAGAAGAAGTGCATAAGAATGCGAATCTAACAGAGGTCGATGTGGCTGAC 1389
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 832 GCTTGGCTGGAAGAAGAAGTGCATAAGAATGCGAACCTAACAGAGGTCGATGTGGCTGAC 891
Query 1390 AGGCTTCTTGAATTCCGTTCAATGCAAGATGGTTTTATGGATACAAGCTTTGATACAATA 1449
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 892 AGGCTCCTTGAATTCCGTTCAATGCAAGATGGTTTTATGGATACAAGCTTCGATACAATA 951
Query 1450 AGTGGTTCCGGTGCAAATGGTGCTATTATACATTATAAGCCCGAGCCTGAGAGCTGCAGT 1509
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 952 AGTGGTTCCGGTGCAAATGGTGCTATTATACATTATAAACCCGAGCCTGAGAGCTGCAGT 1011
Query 1510 CGTGTAGACCCTCAAAAACtttttttGCTGGATAGTGGCGCTCAATATGTTGATGGAACA 1569
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1012 CGTGTAGACCCTCAAAAACTTTACTTGCTGGATAGTGGCGCTCAATATGTTGATGGAACA 1071
Query 1570 ACAGACATCACCAGAACAGTACATTTTAGTGAACCTTCTGCCCGTGAAAAGGAATGTTTC 1629
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1072 ACAGACATCACCAGAACAGTACATTTTAGTGAACCTTCTGCCCGAGAAAAAGAATGTTTC 1131
Query 1630 ACTCGAGTCTTGCAGGGTCATATAGCTCTTGATCAAGCCGTGTTCCCAGAAGGTACTCCT 1689
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1132 ACTCGAGTTTTGCAGGGTCATATAGCTCTTGATGAAGCCGTGTTCCCAGAAGGTACTCCT 1191
Query 1690 GGTTTTGTATTGGATGGGTTTGCACGCTCTTCTCTATGGAAAATTGGACTTGATTACCGC 1749
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1192 GGTTTTGTATTGGATGGGTTTGCACGCTCTTCTCTTTGGAAAATTGGGCTTGATTACCGC 1251
Query 1750 CATGGGACAGGACACGGCGTAGGTGCTGCACTCAATGTGCATGAAGGTCCTCAAAGTATT 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CATGGGACAGGACACGGCGTAGGTGCTGCACTCAATGTGCATGAAGGTCCTCAAAGTATT 1311
Query 1810 AGCTTTCGGTATGGAAACATGACCCCTCTTCAAAATGGCATGATAGTAAGCAATGAACCT 1869
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1312 AGCTTTCGGTATGGAAACATGACCCCTCTTCAGAATGGCATGATAGTAAGCAATGAACCT 1371
Query 1870 GGATATTATGAAGACCATGCATTTGGGATCCGAATTGAGAATCTCCTTCATGTGAGAGAT 1929
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1372 GGATATTATGAAGACCATGCATTTGGGATTCGAATTGAGAATCTCCTTCATGTGAGAGAT 1431
Query 1930 GCTGAAACACCAAACCGCTTTGGTGGTGCTACATACCTTGGATTTGAGAAGCTTACATTC 1989
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1432 GCTGAAACACCAAACCGCTTTGGTGGTACTACATACCTTGGATTTGAGAAGCTTACATTC 1491
Query 1990 TTCCCCATTCAGACAAAAATGGTTGATGTTTCTTTGCTGTCTGATACTGAGGTTGACTGG 2049
||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||
Sbjct 1492 TTCCCCATTCAGACAAAAATGATTGATGTTTCTTTGCTATGTGATACTGAGATTGACTGG 1551
Query 2050 CTTAATAGTTACCACGCGGAAGTCTGGGAAAAGGTTTCACCATTATTGGAAGGTTCTACT 2109
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CTTAATCGTTACCACGTGGAAGTCTGGGAAAAGGTTTCACCATTATTGGAAGGTTCTACT 1611
Query 2110 ACTCAGCAGTGGCTCTGGAACAACACAAGACCCTTAGCCAAACCATGATCAAACCCACCA 2169
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 1612 ACTCAGCAGTGGCTCTGGAACAACACAAGACCGTTAGCCAAAAGATGATCAAACCCGCCA 1671
Query 2170 AGT-TTT 2175
||| |||
Sbjct 1672 AGTGTTT 1678
> Ahg928122 jgi|Araly1|928122|scaffold_300579.1
Length=536
Score = 268 bits (145), Expect = 1e-70
Identities = 180/197 (91%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 1105 ATTAGTACCTACAAATCTGCCTGTGAAAGATA--TTCGAGGAATTTTGAAAGCGAAGCCA 1162
||||||| |||||||||||| ||| ||||||| ||| ||||||| |||||| |||| |
Sbjct 1 ATTAGTAGCTACAAATCTGCATGTCAAAGATATTTTCAAGGAATTCTGAAAGTGAAGAAA 60
Query 1163 AAGTTAAGACAAAGTTTACTGATAGCTCCAGCGGATATACTGCCAATCCTTCTGGTATTT 1222
||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAGCTAAGACGAAGTTTACTGATAGCTCCAGCGGATATACTGCCAATCCCTCTGGTATTG 120
Query 1223 ACATGCAATCTCCTATTTCGTGGGCAAAGGCCATTAAAAATGATGCTGAGCTAAAGGGAA 1282
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 121 ACATGCAATCTCCTATTTCGTGGGCAAAGGCCATTAAAAATGATGCCGAGCTACAGGGAA 180
Query 1283 TGAAGAATTCTCACTTG 1299
||||||| |||||||||
Sbjct 181 TGAAGAACTCTCACTTG 197
Score = 204 bits (110), Expect = 3e-51
Identities = 129/137 (94%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 1870 GGATATTATGAAGACCATGCATTTGGGATCCGAATTGAGAATCTCCTTCATGTGAGAGAT 1929
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GGATATTATGAAGGCCATGCATTTGGGATCCGAATTGAGAATCTCCTTCATGTGAGAGAT 392
Query 1930 GCTGAAACACCAAACCGCTTTGGTGGTGCTACATACCT--T-GGATTTGAGAAGCTTACA 1986
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 393 GCAGAAACACCAAACCGCTTTGGTGGTGCTACATACCTCCTTGGATTTGAGAAGCTTACA 452
Query 1987 T-TCTT-CCCCATTCAG 2001
| | || ||||||||||
Sbjct 453 TATTTTTCCCCATTCAG 469
> Ahg928123 jgi|Araly1|928123|scaffold_300580.1
Length=2446
Score = 248 bits (134), Expect = 1e-64
Identities = 206/239 (86%), Gaps = 11/239 (5%)
Strand=Plus/Plus
Query 557 CTGATGTTTTGGCGCCTGGTGGAAGAGTTGGTATTGACCCT-------TTCCTTTTTTCC 609
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2175 CTGATGTTTTGGCTCCTGGTGGAAGAGTTGGTATTGACCCTGGAGCAGTTCCTTTTTTCC 2234
Query 610 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCAAAGAAGAATCATGAGTTGGTTTAC 669
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2235 GCCGATGCTGCTGAGGAATTGAAGGAGGTTATAGCGAAGAAGAATCATGAGTTGGTTTAC 2294
Query 670 TTGTA-CAATGTAAATCTTGTGGATGAGATATGGAAGG-ACTCAAGGCCAAAGCCTCCAA 727
|||| | | | |||| | | |||| | | | || |||||||||||||||||
Sbjct 2295 TTGTGTCCTTCCATATCTCATCCACAAGATTTACATTGTAC--AAGGCCAAAGCCTCCAA 2352
Query 728 GCAGACAAATAAGGATACATGACTTGAAGTATGCTGGTTTAGATGTGGCCTCGAAATTG 786
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2353 GCAAACGAATAAGGATACATGACTTGAAGTATGCTGGTTTAGATGTGGCCTCAAAATTG 2411
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 669 CTTGTACAATGTAAATCTTGTGGATGAGATATGGAAGGACTCAAG 713
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2338 CTTGTACAATGTAAATCTTGTGGATGAGATATGGAAGGACACAAG 2294
Score = 60.2 bits (32), Expect = 6e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 821 CATCTGCCATTGTAATATCCATGCTTGATGAGATT 855
||||| |||||||||||||||||||||||||||||
Sbjct 2412 CATCTCCCATTGTAATATCCATGCTTGATGAGATT 2446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86502946395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5