BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05500.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477839 jgi|Araly1|477839|fgenesh2_kg.3__540__AT3G05500.1 1685 0.0
> Ahg477839 jgi|Araly1|477839|fgenesh2_kg.3__540__AT3G05500.1
Length=1009
Score = 1685 bits (912), Expect = 0.0
Identities = 980/1012 (97%), Gaps = 7/1012 (1%)
Strand=Plus/Plus
Query 1 ATCACCATTGCTTTGTTTTGTTCGTCAAATATAATCAATTTTAAATTTCTTCTCTTC-TC 59
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 1 ATCACCATTGCTTTGTTTTGTTCGTCAAA-AAAATCAATTTTAAATTTCTTCTCTTCTTC 59
Query 60 TTCAAACGAATCGCCTTTTTCGATAATCTCTTTGCATCGATTTC-ATCATGGCTACTCAA 118
||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 60 TTCAAACGAATCGCC-TTTTCGATAATCTCTTTGCATCGA-TTCGATCATGGCTACTCAA 117
Query 119 ACGGATCTCGCTCAGCCCAAGCTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAT 178
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACGGATCTCGCTCAGCCCAAACTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAC 177
Query 179 TTGCAATTCGTGCAAGCTGCTGCTGTGGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 TTGCAATTCGTGCAAGCTGCTGCTGTTGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 237
Query 239 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 297
Query 299 AAGACTGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGACCGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 357
Query 359 TACATGGACCAGAAGGTTGATATGTCTGTGACTGAGCTTGACCGTCGTGTCCCACCAGTC 418
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 358 TACATGGACCAGAAGGTTGATATGTCTGTGACCGAGCTTGACCGTCGTGTCCCACCAGTT 417
Query 419 GTCAAGCAAGTGTCTGCCCAAGCCATCTCCGCTGCTCAGATAGCACCCATTGTGGCACGT 478
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 418 GTCAAGCAAGTGTCTGCCCAAGCCATCTCAGCTGCTCAGATAGCACCCATTGTGGCCCGT 477
Query 479 GCGTTGGCCTCTGAGGTTCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCGTTGGCCTCTGAGGTGCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 537
Query 539 TCCGTCTACTCCAAGTACGAGCCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 598
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCGTCTACACCAAGTACGAACCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 597
Query 599 GCAGAGCAGTGTGCCGTTTCAGCTTGGAAGAAGCTTAACCAGCTTCCTCTATTCCCAAGG 658
|||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 598 GCAGAGCAATGTGCTGTTTCAGCTTGGAAGAAGCTGAACCAGCTTCCTCTGTTCCCAAGG 657
Query 659 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 717
Query 719 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 777
Query 779 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGACCGAGCCTTTGGAGTTCCATCCA 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGAACGAGCCTTTGGAGTTCCATCCA 837
Query 839 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTTTTGTTTTGTTGGGATTAAGGTGAAC 898
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 838 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTATGGTTTTGTTGGGATTATGGTGAAC 897
Query 899 CGGATCTTGGTTAGCGATTGATCTCTGGTTCTCGTTCtttt-ttttCTTTG-TCATGAAC 956
||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||
Sbjct 898 CGGATCTTGGTTAGCGATTGATCCCTGGTTCTCGTTCTTTTGTTTTTTTTCATCATGAAC 957
Query 957 TTTTGTTGTTTCGTTTAATAATCAAAAGTTGTATAATCTAAGTTTGGGATTA 1008
||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 958 TTTCGTTGTTTCGTTTAATAATCAAAAGTTGTATAATTTAAGTTTGGGATTA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5