BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05545.1 Length=1893 Score E Sequences producing significant alignments: (Bits) Value Ahg477844 jgi|Araly1|477844|fgenesh2_kg.3__545__AT3G05545.1 2904 0.0 > Ahg477844 jgi|Araly1|477844|fgenesh2_kg.3__545__AT3G05545.1 Length=1859 Score = 2904 bits (1572), Expect = 0.0 Identities = 1772/1863 (95%), Gaps = 35/1863 (2%) Strand=Plus/Plus Query 22 ttttCTTCTTCCTGGGTCTCTCTCT-G-GTGGTGACGATCGAAGAGAGTTCACGGATTCG 79 |||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 11 TTTT-TT-TTCCTGGGTCTCTCTCTGGTGTGGTGACGATCGAAGAGAGTTCACGGATTCA 68 Query 80 TACAAGGATTAAATTAATTATTCTGGTAAATTAATCGAAGCGTAAGGAATTGGGGAGAGT 139 || |||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||| Sbjct 69 TAGTAGGATTAAATAAATCATTCTGGTAATTTAATCGAAGCGTAAGGAATTCGGGAGAGT 128 Query 140 GATTTTTCTGGGTTCGAA-TTTGGTGGTTGATTCaaaaaaaaaaaaGGGTTTTGAGATTT 198 || |||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||| Sbjct 129 GA-TTTT-TGGGTTCGAATTTTTGTGGTTGATTCAAAAAAAAAGAAGGGTTTTGAGATTT 186 Query 199 GGGTTATTTTGATTTCGAATTTTGGTTATGGGTTTAGGCAATAAGGGTAACAAATTCAAT 258 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 187 GGGTTGTTTTGATTTCG-ATTTTGGTTATGGGTTTAGGTAATAAGGGTAACAAATTCAAT 245 Query 259 TTCGGCGATAATGATCTCGCCGACGAAGCTAGTGGTGCCGAT---G------GCGACGAA 309 |||||||||||||||||||||||||||| ||||| ||||||| | |||||||| Sbjct 246 TTCGGCGATAATGATCTCGCCGACGAAGGTAGTGCTGCCGATGGCGATTCTCGCGACGAA 305 Query 310 GGTGATGGTTTTGGTTCGGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 369 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 306 GGTGATGGTTTTGGTTCTGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 365 Query 370 GATCGAGCATGGGCTAATCTTCAATGTGACCATCAGTTCCATCTAGATTGTATTGGTTCG 429 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 366 GATCGAGCTTGGGCTAATCTTCAATGTGACCATCAGTTCCATCTTGATTGTATTGGTTCT 425 Query 430 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 485 Query 490 TGGCTTTATGCAAACGGTTGTCGTTCATATCCCGAATTCAATGTCGAGGATTGGGTTCAC 549 |||||||||||||| ||||| ||| ||||||| ||||||| ||||||||||||||||||| Sbjct 486 TGGCTTTATGCAAATGGTTGCCGTACATATCCTGAATTCAGTGTCGAGGATTGGGTTCAC 545 Query 550 GAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGTCTTTTGGAGTTCACTGGTGC 609 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 546 GAAGAAGATATTTATGATATTGGAGCATACTCTGAATTGTCTTTTGGAGTTCACTGGTGC 605 Query 610 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCACCGAGTTCA 669 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 606 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCGCCGAGTTCA 665 Query 670 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGT 729 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 666 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACTGCAGGT 725 Query 730 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTCGCCTTCCTCAAGCAGTGGT 789 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 726 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCATTCGTCTTCCTCAAGCAGTGGT 785 Query 790 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 845 Query 850 GTTTCTGGTGAAGTCCCAACTCCTTATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 909 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 846 GTTTCTGGTGAAGTCCCAACTCCATATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 905 Query 910 GATTATCATCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCGCTCATGTG 969 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 906 GATTATCACCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCCCTCATGTG 965 Query 970 GGCAGTCCAACTCAGCCCACGCCTCCACCAGCCGCTGCGAGGACTTCTCGAGCCAACGGC 1029 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 966 GGTAGTCCAACTCAGCCCACGCCTCCACCAGCTGCTGCGAGGACTTCTCGAGCCAACGGT 1025 Query 1030 TCAGATATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1089 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 TCAGATGTGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1085 Query 1090 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1145 Query 1150 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCCTATTACCAACAGTCTTCTGCA 1209 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1146 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCGTATTACCAACAGTCTTCTGCA 1205 Query 1210 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGGCCTGTATTCCCATCTGGCCGG 1269 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1206 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGACCTGTATTCCCGTCTGGCCGG 1265 Query 1270 AGGCCCGCTAGAGGAATAGCTTCAGGGATGGGATCAACGTCATCTTCTTCAGATCAGGCA 1329 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 1266 AGGCCCGCTAGAGGAATAGCTTCCGGGATGGGATCAACATCATCTTCTTCGGATCAGGCA 1325 Query 1330 GGTGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1389 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1326 GGCGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1385 Query 1390 CAAGCCTACTCGGTTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAT 1449 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1386 CAAGCCTACTCGATTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAC 1445 Query 1450 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCTTAAGAACTG 1509 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1446 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCGTAAGAACTG 1505 Query 1510 AGTCAGTACCCGTTCGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACa-aaa--aa 1566 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1506 AGTCAGTACCCGT-CGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACACAAATCAA 1564 Query 1567 ccaaa-aaaagaaaaaaaaaaCATTGGGAATTTGATATTTGAGAAAACCTGAAAAACTGC 1625 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1565 AAAAAGAAAAAAAAAAAAAAACATTGGGAATTTGATATTTGAGAAAACCTGAAAA-CTGC 1623 Query 1626 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1683 Query 1686 GAGAGAGACTGCCTCCCCCA-GTCGGTGGTGTGACCCCCGTGCGGTTCGAGGTCTGGGTA 1744 ||||||||||||||||||| || |||||||||||| |||||||||||||||||| | Sbjct 1684 GAGAGAGACTGCCTCCCCCGCGTTGGTGGTGTGACC---GTGCGGTTCGAGGTCTGGTT- 1739 Query 1745 TGAATCGGGGGAGCGAAAGAGGTCTTTGGGTATTTGTTTTTTAATGTGGCGACATTGGGT 1804 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1740 TGAATCGGGGGAGCGAAAGAGGTCGTTGGGTATTTGTTTTTTAATGTGGCGACAATGGGT 1799 Query 1805 ATCCAAGTTAT----TACCCTAATGAAACTTTCTTTCTTCTATCTGGTTATGTTAAATTT 1860 ||| |||| || ||||||||||||||||| |||| |||||||||| ||||||||| Sbjct 1800 ATCAAAGTGATGAAGTACCCTAATGAAACTTT-TTTC--CTATCTGGTTTTGTTAAATTC 1856 Query 1861 TAA 1863 ||| Sbjct 1857 TAA 1859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71114487415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5