BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05625.1 Length=1125 Score E Sequences producing significant alignments: (Bits) Value Ahg477853 jgi|Araly1|477853|fgenesh2_kg.3__554__AT3G05625.1 1452 0.0 > Ahg477853 jgi|Araly1|477853|fgenesh2_kg.3__554__AT3G05625.1 Length=924 Score = 1452 bits (786), Expect = 0.0 Identities = 880/926 (95%), Gaps = 4/926 (0%) Strand=Plus/Plus Query 1 GTTCCTTCCCTCCCATTTGTCATCTTATCTTCTGCGATTACTGGTAAAGTGAGAAATCCG 60 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1 GTTTCTTCCCTCCCATTTGTCATCTTATCTTCTGCAATTACTGGTAAAGTGAGCAATCCG 60 Query 61 TTAATCCCTAGAGAAACTGTAATCGTCGCGGTGATTCGGAGAAATTCTTCT-GCTTCCGC 119 ||||||||||||||||||||||||||| || |||||| |||||||||||| || ||||| Sbjct 61 TTAATCCCTAGAGAAACTGTAATCGTCTCGTTGATTCATAGAAATTCTTCTGGC-TCCGC 119 Query 120 GGAAAATGTCACTAACCCAGATCGTGAATCCAATCATATATCCATCTCGCACAATTCCAC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGAAAATGTCACTAACCCAGATCGTGAATCCAATCATATATCCATCTCGCACAATTCCAC 179 Query 180 GGCGTTTCACGGCGATCTCGCCTTTTAAAACCCTAAGTCCCCAATTTTCCCGCCACCCAC 239 ||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||| Sbjct 180 GGCGTTTCATGGCGATTTCACCTTTTAAAACCCTAAACCCCCAATTTTCCCGCCACCCAC 239 Query 240 CTCACGCACTGTCTCGTAGACTCTTCCTTCCTTCTGTTTCCTCTATATGGGATGCCATAA 299 |||||||||| ||||| |||| ||| ||||||||||||||||| |||||||||||||||| Sbjct 240 CTCACGCACTATCTCGGAGACGCTTTCTTCCTTCTGTTTCCTCGATATGGGATGCCATAA 299 Query 300 CCGGCGGCGGAGATTCGAACCCTCGTGAGGCCATCGCAGCGGTTCGACGCGGAATGCAGC 359 |||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 CCGGAGGTGGAGACTCGAACCCCCGTGAGGCCATCGCAGCGGTTCGACGCGGAATGCAGC 359 Query 360 TCTTCAGACAGGGTGATGTTGCTGGATCGGTGGCAGAGTTCGATAGAGCAATCATTTTGG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 360 TCTTCAGACAGGGTGATGTTGCTGGATCGGTGGCAGAGTTCGATAGAGCAATCGTTTTGG 419 Query 420 ATCCCAGGCAAAAGGCATATCTTTGGCAACGCGGGCTTTCTCTTTACTATGTAGATAGGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 420 ATCCCAGGCAAAAGGCATATCTTTGGCAACGCGGGCTTTCTCTTTACTATATAGATAGGT 479 Query 480 TTGAAGAAGGTGCAGAGCAGTTCCGGATAGATGTTGCTCAGAATCCTAATGACACAGAGG 539 |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 480 TTGAAGAAGGCGCAGAGCAGTTCCGGATAGATGTTGCTCAGAACCCAAATGACACAGAGG 539 Query 540 AGTCCATTTGGTGCTTTATCTGCGAGGCGAGGCTCCATGGTGTTGATGTTGCACGAACAC 599 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 540 AGTCCATTTGGTGCTTTATCTGCGAGGCTCGGCTCCACGGTGTTGATGTTGCACGAAAAC 599 Query 600 AGTTTCTCGAGGTTGGTAGAGATTCTCGGCCTGTGATGCGAGAAGCTTATAATCTATTCA 659 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 600 AGTTTCTCGAGGTTGGTAGAGATTCTCGGCCCGTGATGCGGGAAGCTTATAATCTATTCA 659 Query 660 AGAATGGTGGTGATCCTGAAAAGTTAGTAAATGACTTCTCT-AGCGGTCAAGCAAGCGAA 718 |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| Sbjct 660 AGAATGGTGGTGATCCTGAAAAGTTAGTTAATGACTTCT-TGAGCGGTCAAGCAAGCGAA 718 Query 719 TACTTCTATGCTTCTCTGTACGCAGGGCTCTACTATGAAGCTGAGGGTAAATCAGAAAAC 778 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TACTTCTACGCTTCGCTGTACGCAGGGCTCTACTATGAAGCTGAGGGTAAATCAGAAAAC 778 Query 779 GCAAAGTTTCATTTAACCGCGGCTTGTGGATCTCCATATGGGCAGAGGTCTGATGATTAT 838 |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 779 GCAAAGTTTCATATAACCGCGGCTAGTGGATCTCCATATGGGCAGAGGTCTGAAGATTAT 838 Query 839 ATGGCTTCACTTGCTAAAGTCCATTGCCTTTGTAGAAACTGGAGCTCCGGTATTCTTTGA 898 |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| Sbjct 839 ATGGCTTCACTTGCTAAAGTTCACTGCCTTTGTAGAAACTGGAGCTCCGGTATTGTTTGA 898 Query 899 ACCGGTTCATGGTTTTGTGGAGCCAA 924 ||| |||||||||||||||||||||| Sbjct 899 ACCTGTTCATGGTTTTGTGGAGCCAA 924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41935208700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5