BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05640.1 Length=1737 Score E Sequences producing significant alignments: (Bits) Value Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2 1888 0.0 > Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2 Length=1479 Score = 1888 bits (1022), Expect = 0.0 Identities = 1194/1277 (94%), Gaps = 12/1277 (1%) Strand=Plus/Plus Query 399 TCTCTCT-AGTTCAAGATCATATGATATTTTCACTTTCTGGACAAAATGGGACATTTCTC 457 ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 208 TCTATCTGAGTTCAAGATCATATGATATTTTCACCTTCTGGACAAAATGGGACATTTCTC 267 Query 458 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCGAAGAACATCAACAG 517 ||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| Sbjct 268 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCCAAG-A-A-CAACAA 324 Query 518 CAGCAAAAGCTACGCTAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAGAAGGA 577 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 325 CAGCAAAAGCTACGCGAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAAAAGGA 384 Query 578 ACTT-ATTTTGAGATCCTCTGGTTGCATTAATGCAGATGGATCTAATAACTTGGCTTCTG 636 | || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 385 A-TTGATTCTGAGATCCTCTGGTTGCATTAATGCAGATGGTTCTAATAACTTGGCTTCTG 443 Query 637 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTGTGCCATCGTCTGGGAGGGAT 696 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 444 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTCTGCCATCGTCTGGGAGGGAT 503 Query 697 ATGGGTGTCAAGAAGACATGATATTCTGTGGGATATTCGATGGACATGGTCCCTGGGGAC 756 ||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| Sbjct 504 TTGGATGTCAAGAAGACATGATCTTCTGTGGGATATTTGATGGACACGGTCCCTGGGGAC 563 Query 757 ACTTTGTTTCTAAACAAGTCAGAAACTCAATGCCTATATCTTTGCTCTGTAACTGGAAAG 816 |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| Sbjct 564 ACTTTGTTTCTAAACAAGTCAGGAACTCAATGCCTCTATCTTTGCTCTGCAACTGGAAAC 623 Query 817 AGACTCTTTCTCAGACCACAATAGCAGAACCCGATAAAGAGCTACAGCGGTTTGCAATCT 876 |||||||||||||||||||| ||||||| ||||||||| ||||||||||||| || |||| Sbjct 624 AGACTCTTTCTCAGACCACATTAGCAGAGCCCGATAAAAAGCTACAGCGGTTCGCCATCT 683 Query 877 GGAAATACTCATTCCTCAAAACCTGTGAAGCTGTTGATCTGGAGCTTGAGCATCACCGAA 936 |||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||| Sbjct 684 GGAAATACTCATACCTCAAAACATGTGAAGCTGTCGATCGGGAGCTTGAGCATCACCGAA 743 Query 937 AGATAGATTCTTTCAACAGCGGTACGACCGCTCTAACCATTGTGAGACAGGGTGATGTTA 996 |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 744 AGATCGATTCTTTCAACAGCGGTACGACTGCTCTAACCGTTGTGAGACAGGGTGATGTTA 803 Query 997 TTTATATAGCAAACGTCGGGGATTCACGTGCGGTATTGGCCACAGTTTCAGACGAAGGAA 1056 |||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||| Sbjct 804 TTTATATAGCAAACGTTGGGGATTCACGCGCAGTATTAGCCACGGTTTCAGACGAAGGAA 863 Query 1057 GCTTGGTCGCGGTTCAGCTCACCGTAGATTTCAAGCCAAACCTGCCTCAGGAGGAAGAGC 1116 ||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 864 GCTTGGTTGCGGTTCAGCTCACTGTAGATTTCAAACCAAACCTGCCGCAGGAGGAAGAGC 923 Query 1117 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAAGATGAGCCAGGGGTCCACCGTG 1176 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 924 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAGGACGAGCCAGGGGTCCACCGTG 983 Query 1177 TATGGCAACCAGTAGATGAATCTCCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTATT 1236 | |||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||| Sbjct 984 TGTGGCAACCAGAAGAGGAATCTCCAGGACTCGCAATGTCAAGAGCATTCGGAGACTATT 1043 Query 1237 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1103 Query 1297 GAGACCAGTTTATAATCTTGGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1356 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1104 GAGACCAGTTTATAATCTTAGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1163 Query 1357 CCATAGATATTGTTTCCTCGACGGCGGAGCGGGCAAAAGCTGCCAAGCGACTGGTACAGC 1416 |||||| ||||||||| ||||| || |||||| |||| |||||||| ||||||||||||| Sbjct 1164 CCATAGCTATTGTTTCGTCGACCGCAGAGCGGCCAAAGGCTGCCAAACGACTGGTACAGC 1223 Query 1417 AAGCAGTTAGGGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1476 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1224 AAGCGGTTAGAGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1283 Query 1477 TGTGCCTCTTCTTCCATTCTTCATCGTCGTCGCCATCTCTATAGCAACATCTTCTCCATG 1536 |||||||||| |||||||| ||||| ||||||||||| |||||||||||||||| ||||| Sbjct 1284 TGTGCCTCTTTTTCCATTCCTCATCTTCGTCGCCATCACTATAGCAACATCTTCACCATG 1343 Query 1537 CCACGACCTGCAA---GTAGGTAC-TAGTACTTTTGGACCGG-GCAAGAAAAGAAAAAAT 1591 ||||||| || || ||| ||| || || ||||||||||| | |||||||| |||||| Sbjct 1344 CCACGACTTGAAACTTGTAAGTAGGTACTAGTTTTGGACCGGTG-AAGAAAAGGAAAAAT 1402 Query 1592 GCTGCAATGTAGATAGACTTGCGTAAAATCGCATTGAATATTACTTTCTTGCCAAACCAG 1651 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1403 GCTGCAATGTAAATAGACTTGCGTAAACTCGCATTGAATATTACTTTCTTGCCAAACCAG 1462 Query 1652 AGTCCTATCACAATCTA 1668 |||||||| |||||||| Sbjct 1463 AGTCCTATAACAATCTA 1479 Score = 235 bits (127), Expect = 8e-61 Identities = 200/232 (86%), Gaps = 18/232 (8%) Strand=Plus/Plus Query 134 CATAAATAAATAAATTTAGAGAAATATCTAAGTTTGGTTCTTCCCTGTGTCTACCCACCG 193 |||||||||||||| ||||||||||||||| |||| ||||||||||||| | ||| Sbjct 1 CATAAATAAATAAAAGTAGAGAAATATCTAATTTTGTTTCTTCCCTGTGT-T---TGCCG 56 Query 194 TGATCATCATAAAATGGATTGTGATTTCTGATTTGTGAGTCTATCTTTCTCTACTCCATT 253 || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 57 -GA--ATCATTAAATGGATTGTGATTTCTGATTTGTGAGTCAATCTTTCTCTACTCCATT 113 Query 254 AGCTTCCTCTCC-CTTGGATGGTTACGTCACTTTCTCCGAGCTTACGTCATCTATATCCG 312 || ||||||||| |||| | ||||||||||||||||||||||||||||||||| |||| Sbjct 114 AGTTTCCTCTCCGTTTGGGT-ATTACGTCACTTTCTCCGAGCTTACGTCATCTATGTCCG 172 Query 313 GTCTTCACTTCTTTTTCCTTCCATTCCTCAGCAGCATTGCGTAATCTATCTG 364 ||| |||||||||||||||| | |||||||||||||||||||||| Sbjct 173 GTCGTCACTTCTTTTTCCTT--A-------GCAGCATTGCGTAATCTATCTG 215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65172409195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5