BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G05690.1 Length=1464 Score E Sequences producing significant alignments: (Bits) Value Ahg477862 jgi|Araly1|477862|fgenesh2_kg.3__563__AT3G05690.1 2289 0.0 Ahg940092 jgi|Araly1|940092|scaffold_600636.1 348 8e-95 > Ahg477862 jgi|Araly1|477862|fgenesh2_kg.3__563__AT3G05690.1 Length=1462 Score = 2289 bits (1239), Expect = 0.0 Identities = 1398/1472 (95%), Gaps = 22/1472 (1%) Strand=Plus/Plus Query 4 TACTAATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGAGATGGCTTCCTAACA 63 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2 TACTCATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGATATGGCTTCCTAACA 61 Query 64 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCTCTTCTCTACTCTCTACTC--T 121 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 62 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCGCTTCTCTACTCTCTACTCTAT 121 Query 122 -ATCACTCCATCTGT---GAACATATCTTTCTTATTCTTCTAGGCACTATCTATTTTTCA 177 |||||||||||||| ||||| ||||||||| ||| || | ||| |||| | |||||| Sbjct 122 CATCACTCCATCTGTGAGGAACAAATCTTTCTTCTTC-TC-A-GCAATATCCACTTTTCA 178 Query 178 CTTTTTGTAATTGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 237 | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 C-TTTTGT-ATCGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 236 Query 238 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCG 297 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCC 296 Query 298 CCGGCGATTCTGACTCATTCGCCGGAGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAC 357 |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 297 CCGGCGATTCTGACTCGTTCGCCAGTGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAG 356 Query 358 GTGTGGATAAACAGAGCAACTCTGCAACGCACTTAGCTTTCTCACTTGGTGATGTAAAGA 417 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 357 GTGTGGATAAACAGAGCAACTCTGCAACTCACTTAGCTTTCTCACTTGGTGATGTAAAGA 416 Query 418 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTGG 477 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 417 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCATTGCAATCGCCTTGCTTGG 476 Query 478 AACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCTATGGAGAACAACAATACT 537 ||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||| || | Sbjct 477 AACTTGGATTTACTCAGCCACCGATCTACACAAAGTATCCTTATGGGGAACCACAGTATT 536 Query 538 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAAACATGGAAA 597 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 537 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAACCATGGAAA 596 Query 598 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGAGACGCC 657 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 597 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGCGACGCC 656 Query 658 AATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGTAGATGCCGCA 717 | ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 657 AGTCCCGTGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGCAGATGCCGCA 716 Query 718 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 776 Query 778 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAATAGCGGAACCAATGCAAAGAAAG 837 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 777 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAAAAGCGGAACCAATGCAAAGAAAG 836 Query 838 GTGATGGAAGTATGCAGATTCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 897 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 837 CTGACGGAAGTATGCAGATCCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 896 Query 898 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAACGGATTAAATGTGTCGG 957 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 897 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAATGGATTAAATGTGTCGG 956 Query 958 GATCAGAAGTTACTAGCATGAACTACTTCCTAAGTTCTCCCGTTCATTCTCTTGGTGGCA 1017 ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| Sbjct 957 GATCAGAAGTTACAAGCATGAACTACTTCCTAAGTTCTCCAGTCCATTCTCTTGGTGGCA 1016 Query 1018 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGCAATGGATAATGGCTGCTGCAATT 1077 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 1017 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGGAATGGATAATGGCTGCCGCAATT 1076 Query 1078 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1136 Query 1138 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTGGCTGTGAACAGGCAAATCATCTT 1197 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1137 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTAGCTGTGAACAGGCAAATCATCTT 1196 Query 1198 TGGCTCATTCTCTATTAAGGTAACTTCGCCGTGAGGTGAAAAAAGCTTTGATATATTTAT 1257 ||||||||||||||||||||| ||||| | || ||||||||||| ||||||| || || Sbjct 1197 TGGCTCATTCTCTATTAAGGTCACTTCACTGTCAGGTGAAAAAA-CTTTGAT-TA---AT 1251 Query 1258 CTTCAGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGTGTTTGGTCACTAAACCC 1317 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1252 CTTCTGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGGGTTTGGTCACTAAACCC 1311 Query 1318 ACTTGTTCCAACTAGTAGTGTGTGT-T-T-T-AAGAAAACTCTGTTATCTGATTTT-GTA 1372 ||||| ||||||||||||||||||| | | | |||||||||||||||||||||||| ||| Sbjct 1312 ACTTGCTCCAACTAGTAGTGTGTGTGTGTGTTAAGAAAACTCTGTTATCTGATTTTTGTA 1371 Query 1373 GCTCTCTCTGGCTTTGTGTGTTTCTCAAACAACTGTAACAACTTTTAAGTTATGTGGTTT 1432 |||||||||| || |||||||||||||||||||||||| || ||||||||||||||| || Sbjct 1372 GCTCTCTCTGTCTCTGTGTGTTTCTCAAACAACTGTAAGAA-TTTTAAGTTATGTGGCTT 1430 Query 1433 ATGTAACATATTTAAGACCTGTGTTTTTGTAT 1464 |||||||||||||||||| ||||||||||||| Sbjct 1431 ATGTAACATATTTAAGACGTGTGTTTTTGTAT 1462 > Ahg940092 jgi|Araly1|940092|scaffold_600636.1 Length=852 Score = 348 bits (188), Expect = 8e-95 Identities = 495/631 (78%), Gaps = 69/631 (11%) Strand=Plus/Plus Query 188 TTGGA-ATTTGGAGAT-GGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG-CTCCACA 244 ||||| |||||| || ||||||||||| |||| ||| || || || | | ||||| Sbjct 1 TTGGACTTTTGGACATAAGCTATGCAAAC--TGAG-GAA---CTTTTGTC-GCCACCACA 53 Query 245 GACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCGCCGGCGA 304 |||| ||||||||| ||||||||||||||||| |||| || | ||||| || ||||||| Sbjct 54 GACTCCTTGGTGGAATGCTTTTGGATCTCAGCAGTTGACTACAGAGAGCCTTTCCGGCGA 113 Query 305 ---TTCTGACTCATTCGCCGGAGTTAAGGTCGGATCT-GTCGGAGAGACAGGACAA--CG 358 |||||| |||||| |||||||||||| | | | | || ||||||| |||| | Sbjct 114 CGCTTCTGATTCATTCACCGGAGTTAAGG-CAG-T-TACTC-CTGAGACAGAACAAGGTG 169 Query 359 T-GTGGATAAACAGAGCAACTCTGCAACGCACTTAG-CTTTCTCACTTGGTGATGTAAAG 416 | ||||||||||| | | ||| |||| | ||| | ||||||||| ||||| || |||| Sbjct 170 TGGTGGATAAACA-A--AGTTCTACAACTCTCTT-GACTTTCTCACCTGGTGGTGGAAAG 225 Query 417 AGTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTG 476 ||| ||||| |||||||||||||||| | | ||||| | ||||||||| ||||||| Sbjct 226 AGTTCAAGAGATGTGCCAAAGCCTCAT---GTTGCTTTCACGATGCAATCAGCTTGCTTC 282 Query 477 GAACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCT-ATGGAGAACAACAATA 535 || |||||||| |||||||| |||||| |||||| || ||| ||| || ||||||| Sbjct 283 GAGTTTGGATTTGCTCAGCCAATGATCTACACAAAGCAT-CCTCATGTAG---AACAATA 338 Query 536 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAG--CA--GGG----T-AATGCTTCCTCT 586 ||||||||||||||||||||||||||||||||| | ||| | |||||| ||||| Sbjct 339 CTATGGAGTTGTTTCAGCCTATGGATCTCAGAGGTCTTCGGGACGATTAATGCTGCCTCT 398 Query 587 AAACATGGAAAC-G--GAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAAT 643 ||| ||||| || | |||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 399 AAAGATGGAGACAGAAGAAGATGGTACCATCTATGTGAACTCGAAGCAGTACCATGGAAT 458 Query 644 CATAAGGAGACGCCAATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAG 703 || ||| ||||||| ||||| |||||||||| | | || | | ||| Sbjct 459 TATCAGGCGACGCCAGTCCCGAGCAAAGGCTG------------A--A-AA-AC-T-GAG 500 Query 704 TAGTAGATGCCGCAAGCCATATATGCATCATTCGCGCCATCTCCATGC-ATTGCGGCGTC 762 ||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||| |||| Sbjct 501 TAG-A--TGCCGTAAGCCATATATGCATCACTCGCGCCATCTCCATGCTAT-GCGCCGTC 556 Query 763 CTAGAGGATCCGGTGGGAGATTCTTGAACAC 793 |||||||||| |||||| | ||||||||||| Sbjct 557 CTAGAGGATCTGGTGGGCGTTTCTTGAACAC 587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54773772310 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5