BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G05930.1
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928205 jgi|Araly1|928205|scaffold_300662.1 1129 0.0
> Ahg928205 jgi|Araly1|928205|scaffold_300662.1
Length=702
Score = 1129 bits (611), Expect = 0.0
Identities = 669/698 (96%), Gaps = 0/698 (0%)
Strand=Plus/Plus
Query 21 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCCTATATTCGTCACCTTCATGC 80
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2 ACAAACAACAACAATCAACAATGGCAACTTCCATGATCCATATATTCGTCACCTTCATGC 61
Query 81 TCGTGGCCGCCCACATGGCCCTCGCCGATACAAATATGCTTCAAGACTTTTGTGTTGCTG 140
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||
Sbjct 62 TCGTGGCCGCCCACATGGCCATCGCCGATACAAACATGCTTCAAGATTTTTGTGTAGCTG 121
Query 141 ATCTCTCCAACGGTTTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACAC 200
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ATCTCTCCAACGGTGTGAAAGTCAACGGATACCCTTGCAAAGACCCAGCAAAAGTAACAC 181
Query 201 CAGAAGACTTCTACTTCATAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCTTCAATGG 260
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 CAGAAGACTTCTACTTCGTAGGCTTAGCCACTGCTGCAGCCACAGCCAACTCCACAATGG 241
Query 261 GCTCAGCTGTTACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTCTGGGAGTCT 320
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 242 GCTCAGCTGTTACAGGAGCCAACGTTGAGAAAGTGCCTGGCCTCAACACTATGGGAGTCT 301
Query 321 CCATCTCTCGGATCGACTACGCACCTGGCGGACTTAACCCACCACATCTTCACCCAAGAG 380
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 302 CCATCTCTCGGATCGACTACGCACCCGGCGGACTTAACCCGCCCCATCTTCACCCAAGAG 361
Query 381 CCTCTGAAGCCATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTACCG 440
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CTTCCGAAGCCATCTTCGTCCTTGAAGGCCGTCTCTTCGTCGGTTTCTTAACCACTGCCG 421
Query 441 GGAAACTCATCTCCAAACACGTCAACAAAGGAGACGTTTTCGTTTTCCCCAAAGCTCTCC 500
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 GGAAACTCATCTCCAAACACGTCAACAAAGGAGACGTTTTTGTTTTCCCCAAAGCTCTCC 481
Query 501 TCCATTTCCAGCAGAACCCTAACAAAGCTCCTGCTTCCGTCCTCGCTGCTTTCGATAGCC 560
||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |
Sbjct 482 TCCATTTCCAGCAGAACCCTAACAACGCTCCAGCATCCGTTCTCGCTGCTTTCGATAGTC 541
Query 561 AGCTTCCCGGGACTCAAGTTGTTGGACCATCTCTGTTTGGTTCTAACCCACCGATTCCTG 620
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 542 AGCTTCCCGGGACTCAAGTTGTTGGACCTTCTCTGTTTGGTGCTAACCCACCGATTCCTG 601
Query 621 ATGACCTGCTTGCCAAGGCGTTCGGGGCTGCAGCACCAGAGATTCAGAAGATTAAGGGAA 680
||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
Sbjct 602 ATGACCTGCTTGCCAAGGCGTTCGGAGTTGGAGCACCAGAGATTCAGAAGATTAAGGGCA 661
Query 681 AATTCCCACCAAAGAAATAAATAAGTTTCAGACCAGAG 718
||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AATTCCCACCAAAGAAATAAATAGGTTTCAGACCAGAG 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34348748217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5