BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06080.2 Length=2122 Score E Sequences producing significant alignments: (Bits) Value Ahg928231 jgi|Araly1|928231|scaffold_300688.1 2183 0.0 Ahg928230 jgi|Araly1|928230|scaffold_300687.1 265 1e-69 > Ahg928231 jgi|Araly1|928231|scaffold_300688.1 Length=1438 Score = 2183 bits (1182), Expect = 0.0 Identities = 1333/1407 (95%), Gaps = 6/1407 (0%) Strand=Plus/Plus Query 452 TACTTTCAGATGTCTAAGAACTCAAACGTTGAAGAGAATGGAGGAGCAAAGCCAATCTGT 511 ||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| Sbjct 12 TACCTTCAGATGTCTAAGAACTCAAACCTTGAAGAAAACGGAGGAGCAAAGCCAATCTGT 71 Query 512 GAAGCTTTGAGGAGATTCAAAAGGTCGAGGCTTGTGTTCGAGCCGTCTTTAGGAGTgttg 571 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 72 GAAGCTTTGAAGAGATTCAAAAGGTCGAGACTTGTGTTCGAGCCGTCTTTAGGAGTGTTG 131 Query 572 gggtt-tttcttggttggggtctgtttggtttgcagttttttcttctttgATTACAGAAG 630 ||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 132 GGGTTCTTT-TTGGTTGGGGTGTGTTTGGTTTGCAGTTTTTTCTTATTTGATTACAGAAA 190 Query 631 CGTTGCTAAAAGCTATGGCCTTTCGGATAAATCTGAGAGATTCGTTTGGCTCAAGTTTGA 690 ||| |||| |||||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 191 CGTAGCTAGAAGCTATGGCCTTTCGGATAAATCAGACAGATTCGTTTGGCTCAAGCTTGA 250 Query 691 CAATATCAGCAGCAGCAGCAGTAGTAGTAGTAATAGTTCAAAGAGAGTTGGGTTTCTGGA 750 | | | || || |||||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 251 C-A-A-CAACATCAGCAGCAACACTAGTAGTAATAGTTCAAAGAGAGTTGGATTTCTGGA 307 Query 751 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGGTTTGGGACGAGTCTTATCC 810 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 308 AGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGATTTGGGACGAGTCTTATCC 367 Query 811 ATTGTATCAATCCAAAGATTGCAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 870 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 368 ATTGTATCAATCCAAAGATTGTAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGG 427 Query 871 AAGGTCTGATTTGTTCTATACTCAGTGGCGTTGGCAACCTAGACACTGTAATTTGCCCAG 930 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 428 AAGGTCTGATTTGTTCTATACTCAGTGGCGATGGCAACCTAGACACTGCAATTTGCCCAG 487 Query 931 ATTTGATGCAAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTTGTGTTTGTTGGCGA 990 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 488 ATTTGATGCTAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTAGTGTTTGTTGGAGA 547 Query 991 TTCAATAGGAAGAAACCAGTGGGAGTCTCTACTTTGTCTACTATCTTCTGCAGTCAAGAA 1050 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 548 TTCAATAGGAAGAAACCAGTGGGAGTCTCTTCTGTGTCTACTATCTTCTGCAGTCAAGAA 607 Query 1051 CGAGAGCTTGATTTATGAAATAAATGGAAGTCCGATCACAAAGCACAAAGGGTTCTTGGT 1110 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 608 CGAGAGCTTAATTTATGAAATAAATGGAAGTCCCATCACAAAGCACAAAGGGTTCTTGGT 667 Query 1111 GTTCAAATTTGAGGAGTACAATTGCACAGTGGAGTACTACAGATCTCCATTTTTGGTTCC 1170 ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| Sbjct 668 GTTCAAATTTGAGGAGTACAATTGCACTGTGGAGTACTACAGATCACCATTTCTGGTTCC 727 Query 1171 TCAAAGCAGACCACCGATTGGATCACCTGGAAAGGTCAAGACAAGTTTGAAACTGGACAC 1230 ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 728 TCAAAGCAGACCACCGATTGGATCACCCCAAAAGGTTAAGACAACTTTGAAACTGGACAC 787 Query 1231 TATGGATTGGACTTCAAGCAAATGGAGAGATGCTGACGTTTTAGTGCTCAATACTGGACA 1290 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 788 TATGGATTGGACTTCAAGCAAATGGAGAGATGCAAACGTTTTAGTGCTCAATACTGGTCA 847 Query 1291 CTGGTGGAACGAGGGGAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 1350 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 TTGGTGGAACGAGGGAAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGT 907 Query 1351 AAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 1410 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 GAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATG 967 Query 1411 GATACATACCGAGCTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACTTTCGCCCCCGT 1470 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 968 GATACATACCGAGGTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACATTCGCTCCCGT 1027 Query 1471 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCATATGGAGACATTACCAGA 1530 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1028 GCATTTCAGGGGAGGAGATTGGAAAACAGGAGGAACATGTCACATGGAAACATTACCAGA 1087 Query 1531 GATTGGAACCTCATTGGCTTCATCAGAGACCTGGGAACAGTTAAAGATCCTCAGAGATGT 1590 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1088 GATTGGAACCTCATTGGCTTCATCAGAGACATGGGAACAGTCAAAGATCCTCAGAGATGT 1147 Query 1591 GTTGTCACATAACTCAAACAGATCAGAGACTGTTAAAGTGAAACTGTTGAACATAACGGC 1650 |||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1148 GTTGTCACATTACTCGAACAGATCAGAGACTGTTAAAATGAAAGTGTTGAACATAACGGC 1207 Query 1651 AATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCATGGTCC 1710 ||||||||||||||||||||| || |||||||| ||||||||||| ||||||| | |||| Sbjct 1208 AATGGCTGCTCAAAGAAAAGACGGCCACCCATCGCTCTACTATCTTGGTCCGCTTAGTCC 1267 Query 1711 TGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGACACGTG 1770 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1268 TGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCAGACACGTG 1327 Query 1771 GAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGAGT 1830 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1328 GAACGAGGTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTTCTTCTTCTAAAAGTGT 1387 Query 1831 TGAAGAAGCGAACAGTACAGGAAATGT 1857 |||||||||||| | |||||||| ||| Sbjct 1388 TGAAGAAGCGAATACTACAGGAA-TGT 1413 > Ahg928230 jgi|Araly1|928230|scaffold_300687.1 Length=296 Score = 265 bits (143), Expect = 1e-69 Identities = 161/170 (95%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1645 AACGGCAATGGCTGCTCAAAGAAAAGATGGTCACCCATCACTCTACTATCTCGGTCCGCA 1704 ||| ||||||||||||||||||||||| ||||| ||||| || ||||||| |||||||| Sbjct 15 AACAGCAATGGCTGCTCAAAGAAAAGACGGTCATCCATCGCTTTACTATCACGGTCCGCT 74 Query 1705 TGGTCCTGCACCGCTTCATCGCCAAGACTGTAGCCACTGGTGCCTTCCCGGTGTTCCTGA 1764 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 75 TGGTCCTGCACCGCTGCATCGCCAAGACTGTAGCCACTGGTGTCTTCCCGGTGTTCCTGA 134 Query 1765 CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT 1814 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CACGTGGAACGAGCTCTTCTATGCATTATTTATGAAACAAGAAGCTCCTT 184 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79837153520 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5