BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06170.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928240 jgi|Araly1|928240|scaffold_300697.1 1943 0.0
Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192 285 7e-76
Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425 281 8e-75
> Ahg928240 jgi|Araly1|928240|scaffold_300697.1
Length=1276
Score = 1943 bits (1052), Expect = 0.0
Identities = 1187/1253 (95%), Gaps = 5/1253 (0%)
Strand=Plus/Plus
Query 88 aaaaaaaTCTCTGAAACAATGGCGTGTTGCTTAGCTTCGTGCTGTGCGTCGGCGACTTGT 147
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 AAAAAATTCTCTCAAACAATGGCGTGTTGCTTAGCTTCGTGTTGTGCGTCGGCGACTTGT 62
Query 148 GGATTATGCTCGTCGGTAGCATCGGGGATATCGAGGAAATCAGCGAGGATCGCTTATTGT 207
||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 63 GGATTATGCTCGTCGGTGGCATCGGGGATAACGAGGAAATCTGCGAGGATCGCTTATTGT 122
Query 208 GGTCTCTTCGGTGCCTCTCTTGTCGTCTCCTGGATTCTTCGTGAGACTGGTGCTCCGCTC 267
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGTCTCTTTGGTGCTTCTCTTGTCGTCTCCTGGATTCTTCGTGAGACTGGTGCTCCGCTC 182
Query 268 CTCGAGAAACTCCCTTGGATCAATACTTCTGATTCATATACCAAAGAATGGTATCAGCAA 327
|||||||||||||||||||| || || || ||||||||| |||||||||||||||||||
Sbjct 183 CTCGAGAAACTCCCTTGGATAAACACATCCGATTCATATTCCAAAGAATGGTATCAGCAG 242
Query 328 CAAGCTGTTCTTCGTGTGAGCTTTGGGAATTTCCTCTTCTTTGCAATATATGCTTTGATC 387
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 243 CAAGCTGTTCTTCGTGTGAGCTTTGGGAATTTCCTTTTCTTTGCTATATATGCTTTGATC 302
Query 388 ATGATTGGTGTCAAGGACCAGAATGACAGGCGTGACTCGTGGCACCATGGTGGGTGGGGT 447
||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 303 ATGATTGGTGTGAAGGACCAGAACGACAGGCGTGACTCATGGCACCATGGTGGATGGGGT 362
Query 448 TTGAAGATGATTGTCTGGTTTTTGCTTGTTGTCCTCATGTTTTTTGTTCCAAATGTTATC 507
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTGAAGATGATCGCCTGGTTTTTGCTTGTTGTCCTCATGTTTTTTGTTCCAAATGTTATC 422
Query 508 GTCTCGTTATATGGAACGTTGTCAAAATTTGGTGCTGGAGCGTTTCTGTTGGTTCAAGTG 567
||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 423 GTCTCAATCTATGGAACTTTGTCAAAGTTTGGTGCTGGAGCGTTTCTGTTGGTTCAAGTG 482
Query 568 GTCTTATTATTAGATGCTACACATAACTGGAATGATTCATGGGTCGAAAAGGACGAAAAG 627
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 GTCTTATTGTTAGATGCTACACATAACTGGAATGATTCATGGGTCGAAAAGGATGAAAA- 541
Query 628 AAA-TGGTACATCGCTCTGCTTGTCATATCAATCGTGTGTTACATTGCTACATATACCTT 686
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 542 AAAGTGGTACATCGCTCTGCTTGTTATATCAATTGTGTGTTACATTGCTACATATGCCTT 601
Query 687 CTCAGGAATCCTGTTCATCTGGTTCAACCCATCTGGTCAGGATTGTGGACTTAATGTTTT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTCAGGAATCCTGTTCATCTGGTTCAACCCATCTGGTCAGGATTGTGGACTTAATGTTTT 661
Query 747 CTTCATTGTCATGCCGATGATCTTGGCTTTTGTTTTTGCGATTATTGCTTTACATCCTGC 806
|||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 662 CTTCATCGTTGTGCCGATGATCTTGGCCTTTGTTTTTGCTATTATTGCTTTACATCCTGC 721
Query 807 GGTGAATGGCAGTCTTTTACCGGCATCAGTTATATCGGTTTACTGTGCTTATGTCTGTTA 866
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 GGTGAACGGTAGTCTTTTACCGGCATCAGTTATTTCGGTTTACTGTGCTTATGTCTGTTA 781
Query 867 CACGGGCCTCTCTAGCGAACCACATGACTATGTGTGCAATGGCCTTAACAAATCCAAGGC 926
|||||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 782 CACGGGTCTCTCGAGCGAACCGCATGACTATGTTTGCAATGGACTTAACAAATCCAAGGC 841
Query 927 AGTGAACGCAAGTACTCTCATCCTTGGAATGCTCACTACGGTTCTCTCGGTTCTATACTC 986
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 842 AGTGAACGCAAGTACCCTCATCCTCGGAATGCTCACTACGGTTCTCTCGGTTCTATACTC 901
Query 987 CGCCCTCCGAGCTGGCTCTTCCACCACATTCCTCTCGCCACCGTCTTCACCCAGATCAGG 1046
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 902 CGCCCTCCGAGCTGGCTCTTCCACCACATTCCTCTCACCACCATCTTCCCCCAGATCAGG 961
Query 1047 TGTGAAGGATGCATTGTTAGGGGACCCTGAGGAC-GG--GAAGAAGAGTGGTGAAGCCGA 1103
||||||||| |||||||||| |||||| |||||| || |||||||||||||||||| ||
Sbjct 962 TGTGAAGGACGCATTGTTAGAGGACCCCGAGGACGGGAAGAAGAAGAGTGGTGAAGCAGA 1021
Query 1104 GGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGCAT 1163
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGCAT 1081
Query 1164 GTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGATCGA 1223
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTACGCTGCAATGCTTCTCTCTGGATGGACTGACTCATCAGAGAGTGCGACTCTGATCGA 1141
Query 1224 TGTGGGATGGACCTCGGTCTGGGTCAAGATATGCACGGGTTGGGTCACGGCCGGACTCTA 1283
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 1142 TGTGGGATGGACCTCGGTCTGGGTCAAGATATGCACCGGTTGGGTCACAGCCGTACTCTA 1201
Query 1284 CATATGGACACTCATTGCACCACTCATCCTTCCAGATCGCGAGTTCTACTAAA 1336
||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1202 CATATGGACACTCATTGCACCGCTCATCCTTCCTGATCGCGAGTTCTACTAAA 1254
> Ahg905064 jgi|Araly1|905064|Al_scaffold_0003_2192
Length=354
Score = 285 bits (154), Expect = 7e-76
Identities = 188/204 (92%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 1043 CAGGTGTGAAGGATGCATTGTTAGGGGACCCTGAGGACG-G--GAAGAAGAGTGGTGAAG 1099
||||||| ||||| |||||||||| ||||| ||||||| | ||||| |||||||||||
Sbjct 149 CAGGTGTAAAGGAGGCATTGTTAGAAGACCCCGAGGACGAGAAGAAGACGAGTGGTGAAG 208
Query 1100 CCGAGGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGA 1159
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 209 CCGAGGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTGTGCGCTTGCGA 268
Query 1160 GCATGTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGA 1219
||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 269 GCATGTATGGTGCAATGCTTCTCTCGGGATGGACTGACTCATCAAAGAATGCGACTCTGA 328
Query 1220 TCGATGTGGGATGGACCTCGGTCT 1243
| ||||||||||||||||||||||
Sbjct 329 TTGATGTGGGATGGACCTCGGTCT 352
> Ahg897459 jgi|Araly1|897459|Al_scaffold_0005_1425
Length=627
Score = 281 bits (152), Expect = 8e-75
Identities = 186/202 (92%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 1045 GGTGTGAAGGATGCATTGTTAGGGGACCCTGAGGACG-G--GAAGAAGAGTGGTGAAGCC 1101
||||| ||||| |||||||||| ||||| ||||||| | ||||| |||||||||||||
Sbjct 424 GGTGTAAAGGAGGCATTGTTAGAAGACCCCGAGGACGAGAAGAAGACGAGTGGTGAAGCC 483
Query 1102 GAGGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGC 1161
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 484 GAGGCACGACCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTGTGCGCTTGCGAGC 543
Query 1162 ATGTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGATC 1221
||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 544 ATGTATGGTGCAATGCTTCTCTCGGGATGGACTGACTCATCAAAGAATGCGACTCTGATT 603
Query 1222 GATGTGGGATGGACCTCGGTCT 1243
||||||||||||||||||||||
Sbjct 604 GATGTGGGATGGACCTCGGTCT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5