BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06240.1 Length=1708 Score E Sequences producing significant alignments: (Bits) Value Ahg477924 jgi|Araly1|477924|fgenesh2_kg.3__625__AT3G06240.1 2300 0.0 > Ahg477924 jgi|Araly1|477924|fgenesh2_kg.3__625__AT3G06240.1 Length=1618 Score = 2300 bits (1245), Expect = 0.0 Identities = 1465/1571 (93%), Gaps = 16/1571 (1%) Strand=Plus/Plus Query 74 TTATATCTAATAATTAATTTAAAGAGAAAATTTATAAAAGTTTATTAGAGCAAATAACTC 133 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 55 TTATATCTAATAATTAATTTAAAGAGAAAATTTACAAAAGTTTATTAGAGCAAATAACTC 114 Query 134 AAACTCGGATTTTATAGTCGTTATGACCCGGTTTGACTAT-TGAACCGTTTAACCGAGAA 192 |||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| ||| Sbjct 115 AAACTC---TTTTATAGTCGTTATCACCCGGTTTGACTATAT-AACCGTTTAACCGGGAA 170 Query 193 ATTGGGACTCAATTAAGACAACCGAAACTAGACCCGGATCCAGTGTTAGCGGGCTAGATT 252 ||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 171 ATTGGGATTGAATTAAGACAACCGAAATTAGACCCGGATCCAGTGTTACCGGGCTAAATT 230 Query 253 AAGGTGTCGGGTCATAGCGGAGAAGCAACCAGACGCCAACAAT-GAA---A-GCGATCCA 307 |||||||||||||||||| ||||||| |||||||| ||| || ||| | |||||||| Sbjct 231 AAGGTGTCGGGTCATAGCAGAGAAGCTGCCAGACGCTAACGATCGAATGGATGCGATCCA 290 Query 308 GTTGCTGTGGGAAGCGATAATGGAGGCGACGAAGAGAGAAAGACGGAGAGAAGATGACGA 367 |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| Sbjct 291 GTTGCTGTGGGAAGCGATAATGAAAGCGACGAAGAAAGAAAGACGGAGAGAAGATGACGA 350 Query 368 CGGCGAAAAAGCTTCACCGGAATCACTCGTTCTTCCACCAGAGATCATTACAGAAATTCT 427 ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 351 CGGCGAAGAAGCTTCAACGGAATCACTCGTCCTTCCTCCAGAGATCATTACAGAAATTCT 410 Query 428 TCTCCGATTACCAGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTCTTTTGCAC 487 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 411 TCTCCGATTACCGGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTATTTTACTC 470 Query 488 TTTATCGTCAGATCCAGGGTTCGCGAAGATTCACCTCGATCTGATCCTTCGAAACGAATC 547 | | || || |||||||| |||||||||| ||||||||||||||||||||||||||| | Sbjct 471 TCTGTCTTCGGATCCAGGATTCGCGAAGAATCACCTCGATCTGATCCTTCGAAACGACGC 530 Query 548 CGTAAGATCGCTCCACCGTAAGCTCATTGTGTCTTCACATAATCTGTACTCGTTAGATTT 607 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 531 CGTAAGATCGCTCCACCGTAAGCTCATCGTGTCTTCACATAATCTATACTCTTTAGATTT 590 Query 608 CAATTCGATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACACAATTATCCTCTTAA 667 | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 591 CGATTCAATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACTCAATTATCCTCTTAA 650 Query 668 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGGGGGACCATCTGTACGA 727 ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 651 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGAGAGAGCATCTGTACGA 710 Query 728 TGATCGTCGCGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 787 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TGATCGTCGTGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 770 Query 788 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTTTCTTGTA 847 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 771 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTATCTTGTA 830 Query 848 TAATCCAACTACCGGAGATTCCAAGAGATTACCTGAAAATTTTCGTCCCAAATCTGTAGA 907 ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 831 TAATCCAACCACCGGAGATTCCAAGAGATTACCTGAAACTTTGCGTCCCAAATCTGTAGA 890 Query 908 ATACGAAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGGTCTCACTGATGATTA 967 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 891 ATACGGAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGATCTCACTGATGATTA 950 Query 968 CAAATTGGTGAAGCTTGTTGCTACCAGTGAAGATATTCTCGATGCTAGTGTCTATTCCTT 1027 |||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||| Sbjct 951 CAAAGTGGTGAAGCTTGTTGCTACCAGTGACGATATTCTTGGTGCTAGTGTCTATTCCTT 1010 Query 1028 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAGCACAACGATGGCTCCTA 1087 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1011 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAACACAACGATGGCTTCTA 1070 Query 1088 CACGTCCGGTGTGCATTTCAACGGTGCGATTCACTGGGTGTTCACAGAGAGTAGGCACAA 1147 |||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| |||| Sbjct 1071 CACGTCCGGTGTACATTTCAACGGTGCGATTCACTGGGTTTTCGCAGAGATTAGCCACAG 1130 Query 1148 CCAAAGAGTGGTTGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCAGTGCC 1207 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1131 CCAAAGAGTGGTCGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCATTGCC 1190 Query 1208 TGATGAAGCTGAAGATTGTTC-CCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAATG 1266 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 1191 TGATGAAGCTGAAGATTGT-CACCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAGTG 1249 Query 1267 GACGTCTCTGTGTGGTCAATAGTTGCTACGATGT-GCATGATGATATATGGGTGATGAGT 1325 ||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| Sbjct 1250 GACGTCTCTGTGTGGTCAATAGTTGCTACGA-GCAGCACGATGATATATGGCTGATGAGT 1308 Query 1326 GAGTACGGTGAAGCTAAATCCTGGAGCAGAATTCGAATCAACTTGTTGTATAGGTCGATG 1385 |||||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| Sbjct 1309 GAGTACGGTGAAGCTAAATCATGGAGCCGAATCCGGATCAACTTGTTGTATAGGTCGATG 1368 Query 1386 AAACCGCTCTGTTCGACTAAGAACGATGAAGAGGTTCTTCTGGAGCTTGATGGAGACCTG 1445 |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct 1369 AAACCGCTGTGTTCGACTAAGAAGGATGAAGAGGTTCTTCTAGAGCTTGATGGAGACATG 1428 Query 1446 GTGTTGTACAACTTTGAAACCAATGCATCGAGTAATCTAGGAATTTGTGGGGTTAAGCTC 1505 ||||||||||||||||| |||||||||||||||||||| |||||| | ||| ||||||| Sbjct 1429 GTGTTGTACAACTTTGAGACCAATGCATCGAGTAATCTGGGAATTCGCGGGATTAAGCTT 1488 Query 1506 AGTGACGGGTTCGAGGCAAATACATACGTAGAGAGCCTCATATCACCCAACTCTTATGGT 1565 |||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 1489 AGTGACGGATTTGAGGCCAATACGTACGTAGAGAGCCTCATATCACCCAACCCTTGTGGT 1548 Query 1566 ATAGAGAGCTGAGGAAGTCTGCTTTTTGCTAAGA-TATAATAAACCAACATTCGGATTAG 1624 | ||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||| Sbjct 1549 AGAGAGAGCTGAGAAAGTCTGCTTTCT-CTAAGAATATAATAAACCAACATTCGGATTAG 1607 Query 1625 AAATGTTTTAG 1635 |||||||||| Sbjct 1608 CAATGTTTTAG 1618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64067792090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5