BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06340.1
Length=2588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477936 jgi|Araly1|477936|fgenesh2_kg.3__637__AT3G06340.2 3410 0.0
> Ahg477936 jgi|Araly1|477936|fgenesh2_kg.3__637__AT3G06340.2
Length=2422
Score = 3410 bits (1846), Expect = 0.0
Identities = 2274/2472 (92%), Gaps = 63/2472 (3%)
Strand=Plus/Plus
Query 130 GGGTTGGGGGTTCTATGATACTTGTACTGGATTGATAATGAGTATCAACAGAGATGAGGC 189
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GGGTTGGGGGTTCTATGATACTTGTGCTGGATTGATAATGAGTATCAACAGAGATGAGGC 60
Query 190 TCTTAGAGCCAAAGATCTT-GCGGAGGGTTTGATGAAAAAGACCGATTTTACTGCTGCTC 248
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TCTTAGAGCCAAAGAT-TTAGCGGAGGGTTTGATGAAAAAGACTGATTTTACTGCTGCTC 119
Query 249 GTAAGCTTGCAATGAAGGCTCAAAAAATGGATTCCAGCCTGGAGAACATATCTCGTATGA 308
|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 120 GTAAGCTTGCTTTGAAGGCTCAAAAAATGGACTCCAGCTTGGAGAACATATCTCGTATGA 179
Query 309 TAATGGTTTGTGATGTTCACTGTGCTGCAACGGAGAAGTTGTTTGGAACTGAGATGGATT 368
||||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||||
Sbjct 180 TAATGGTCTGTGATGTGCACTGTGCTGCAACACAGAAGCTGTTCGGAACTGAGATGGATT 239
Query 369 GGTATGGTATTCTTCAGGTTGAGCAGATCGCTAATGATGTTATCATCAAGAAACAGTACA 428
|||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 240 GGTACGGTATACTTCAGGTTGAGCAGATTGCTAATGATATTATCATCAAGAAACAGTACA 299
Query 429 AGAGGCTTGCGCTTCTTCTCCACCCTGACAAAAATAAGCTCCCCGGTGCTGAATCTGCTT 488
|| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 300 AGCGGCTTGCGCTTCTTCTCCACCCTGATAAAAATAAGCTTCCGGGTGCTGAATCTGCTT 359
Query 489 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAGAGAGAAAAGGACGCTTCATG 548
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 360 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAAAGAGAAAAGGATGCTTCATG 419
Query 549 ACAATAAACGCAAAACTTGGAGAAAGCCTGCA---GCACCGCCATATAAAGCCCAACAGA 605
||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 420 ACATTAAACGCAAAACTTTGAGAAAGCCTGCACCTGCACCGCCATATAAAACCCAACAGA 479
Query 606 TGCCGAATTATCACACACAACCTCATTTTCGGGCAAGCGTCAATACGAGAAACATCTTCA 665
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 480 TGCCGAATTATCACACACAACCTGTTTTTCGGGCAAGCGTCAGTACGAGGAACATCTTCA 539
Query 666 CTGAGTTGAGACCCGAAATCAGGCATCCTTTCCAGAAAGCTCAAGCCCAACCAGCTGCTT 725
|||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 CTGAATTGAGACCTGAAAACAGGCATCCTTACCAGAAAGCTCAAGCCCAACCAGCTGCTT 599
Query 726 TCACTCACCTTAAAACCTTTGGGACCTCTTGTGTC-TTCTGCCGGG-TGAGGTATGAATA 783
||| |||||||| ||||||| ||||| ||||| | |||||||||| | |||||||||||
Sbjct 600 TCAGTCACCTTACAACCTTTTGGACCACTTGT-CCATTCTGCCGGGCT-AGGTATGAATA 657
Query 784 TGATCGGGCACATGTCAACAAGGAAGTCACTTGT-GAGACTTGTAAAAAACGTTTCACTG 842
| | |||||||||||||||||||||||||||||| | | |||||| ||||| |||||||
Sbjct 658 TCAACGGGCACATGTCAACAAGGAAGTCACTTGTCG-GCCTTGTATTAAACGGTTCACTG 716
Query 843 CTTTTGAAGAACCTTTGCAGAGTGCACCACAGGCGAAAGGCCCATCTCAGACTACTTATT 902
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 717 CTTTTGAAGAACCTTTGCAGAGTGCACCACCGGCGAAAGGGCCATGTCAGACTACTTATT 776
Query 903 GCTTCCCACAGCAGAGCAAATTCCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTC 962
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 777 CCTTCCCACAACAGAACAAATTTCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTT 836
Query 963 CAGAAAATCCTCCCACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 1022
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CAGAGAATCTTCCTACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 896
Query 1023 CAAAACA-CAATGGGAAGAGGAAGAGGAAGAATGTGGCTGAATGTAGTG-AA--AGCTCT 1078
||||| | |||||||||||||||||| |||||| ||| ||||||||||| || ||||||
Sbjct 897 CAAAA-ATCAATGGGAAGAGGAAGAGAAAGAATATGGTTGAATGTAGTGAAAGCAGCTCT 955
Query 1079 GACAGTGAAAGTAGCAGTGAGTCAGAAGATGATGTAAATAATGATACTACGGCAGCACAA 1138
||||||||||||||||||||||||| | | |||| || |||| ||||||||||
Sbjct 956 GACAGTGAAAGTAGCAGTGAGTCAG-A-A-GATG-------TG--ACTATGGCAGCACAA 1003
Query 1139 GATTCAGGGTCCAATGGAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1198
|||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GATTTGGGGGCCAATGAAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1063
Query 1199 TCCTATAATGAGAATTTGAGCGATGATGATGTCGACTTAGTCAACGACAATGGGGAAGGG 1258
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 1064 TCCTATAATGAGAATTTGAGCGATGATGATGTAGACTTAGTCAACCACAATGGGAAAGGG 1123
Query 1259 TCCGGGAAAA-ACATTGATACTGAAAGGGAAAAAGAAACAGAGGAAGAAAAGCAGACAAA 1317
||| |||||| |||| ||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct 1124 TCC-GGAAAACACATAGATACTGAAAGGGAAGAAGAGACAAAGGAGGAAAAGCAGACAAA 1182
Query 1318 TGAGAATCATAGCTCCACTGAAAGCATAGACATGAATGGGAAGATAGAAGTTGATCAGGT 1377
|||| |||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 1183 TGAGGATCATAGCTCTACTGAAAGCATAGACATGAAGGGGAAGATAAAAGTTGACCAGGT 1242
Query 1378 GGAAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1437
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GGTAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1302
Query 1438 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGACTTCGATAAGTTGAGGGAGAA 1497
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1303 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGAATTCGATAAGTTGAGGGAAAA 1362
Query 1498 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGAATGCCTAG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1363 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGGATGCCTAG 1422
Query 1558 ATTTTATGCTCTCATaaaaaaaGTTACAACTCCGGATTTCATGCTTAGGTACGTCTGGTT 1617
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1423 ATTTTATGCTCTCATAAGAAAAGTTACAACTCCGGATTTCATGCTTAAGTACGTATGGTT 1482
Query 1618 CGAGGTAGACCAAGATCAAGAGAATGAAACACCAAATTTGCCCGTCTCTGTTGGTAAGTT 1677
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1483 AGAGGTAGATCAAGATCAAGAGAATGAAACACCAAAGTTGCCTGTCTCTGTTGGTAAGTT 1542
Query 1678 TGTAGTTGGGAATATTGAGGAGACGAATTTGTGTTCCATTTTCTCTCATTTTGTCTACAG 1737
| |||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1543 TAAAGTTGGGAATATGGAGGAGACGAATGAGTGTTCCATTTTCTCTCGTTTGGTCTACAG 1602
Query 1738 CACAACAAAAATCAGGACTCGCAAGTTTACTGTTTTCCCAAAGAAAGGAGAAATATGGGC 1797
|||||||| ||||||| |||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1603 CACAACAAGAATCAGGGGTCGCAAGTTTACGGTATTCCCAAAGAAAGGAGAAACATGGGC 1662
Query 1798 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATGAAGTACGA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1663 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATTAAGTACGA 1722
Query 1858 GTATGAATTTGTTGAGATCCTGTCTGACCATGCAGAGGGAGCCACGGTATCAGTTGGGTT 1917
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1723 GTATGAATTTGTTGAGATCTTGTCTGATCATGCAGAGGGAGCCACGGTGTCAGTTGGGTT 1782
Query 1918 CTTGTCTAAAGTGCAAGGCTTTAACTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1977
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1783 CTTGTCTAAAGTGAAAGGCTTTAATTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1842
Query 1978 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 1902
Query 2038 ATTAACAGGAACAGAAGGAAGAGGCATAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 2097
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1903 ATTAACAGGAACAGAAGGAAGAGGCGTAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 1962
Query 2098 TTTGCCAGCCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCTGCTCAAGACCGAGACCG 2157
||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1963 TTTACCAGTCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCAGCTCAAGACCGAGACCA 2022
Query 2158 CCAGTCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTTTTGTGA 2217
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2023 TCAATCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTGTTGTGT 2082
Query 2218 CCATGAATTGCTCAACGCGAAA-TTCTTGGAGCTCGTTTTATTTTGTTCAGGCGTACAGG 2276
|||||| |||||||| | ||| |||||||||||||||| |||||||||| |||||||||
Sbjct 2083 CCATGACTTGCTCAAATC-AAAGTTCTTGGAGCTCGTTT-ATTTTGTTCAAGCGTACAGG 2140
Query 2277 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCATCGTTTAAGCCCGATACCTCGCTG 2336
||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||| |||
Sbjct 2141 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCTTCGTT-AAGCTCGATCCCTCTCTG 2199
Query 2337 TTGTCTTGTGACATACTCGAGTCATGATTCTGGTGGGAAttttttttGTTATATGTCTAG 2396
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 2200 TTGTCTTGTGACATACTCGAGTCATGATACTGGTTGGATTTTTTTTTGTTATATGTCT-- 2257
Query 2397 CTCTTACGTTTCTGTTTTTGTTTTAGGTTCTCTCAGACTTGAAACTTAACCAGTATTTGT 2456
| || | |||||| |||||||||||||||||||||||||||||
Sbjct 2258 -T-TT---T---------------AGGTTCACTCAGACTTGAAACTTAACCAGTATTTGT 2297
Query 2457 CTAAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAAACAAGTGGTGAAAACCCTTTT 2516
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2298 CTCAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAATGAAGTGGTGAAAACCCTTTT 2357
Query 2517 TGGCCATATTCTACTTGTACTATCCATTGTTCACTTGTAAGTTGTAATATAGCATCAGTT 2576
||||||| || | ||||||| ||||||| ||||||||||| |||| |||||||||
Sbjct 2358 TGGCCATGTTGTGCTTGTACCATCCATTTTTCACTTGTAA-----AATA--GCATCAGTT 2410
Query 2577 TCGATTTCTGTT 2588
||||||||||||
Sbjct 2411 TCGATTTCTGTT 2422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97587207690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5