BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06470.1 Length=1092 Score E Sequences producing significant alignments: (Bits) Value Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1 1417 0.0 Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1 750 0.0 > Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1 Length=980 Score = 1417 bits (767), Expect = 0.0 Identities = 923/995 (93%), Gaps = 23/995 (2%) Strand=Plus/Plus Query 28 CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT 87 |||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct 1 CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT 60 Query 88 ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT 147 ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| | Sbjct 61 ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT 120 Query 148 CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA 206 |||||| | ||||||||||||||||||||||| ||| |||||||||||| |||||||||| Sbjct 121 CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA 179 Query 207 CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT 265 || |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| |||| Sbjct 180 CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT 238 Query 266 CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC 325 ||||||||| |||||| |||||||||| |||||||||||||| |||||||| |||||||| Sbjct 239 CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC 298 Query 326 GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC 384 |||||||||||||| |||||||||||| |||||||||| ||| ||| |||||||||||| Sbjct 299 GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC 357 Query 385 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG 444 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 358 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG 417 Query 445 GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT 504 ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 418 GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 477 Query 505 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT 564 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 478 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT 537 Query 565 TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 624 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 597 Query 625 TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT 683 |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 598 TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT 656 Query 684 CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC 742 |||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct 657 CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC 715 Query 743 GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC 802 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 716 GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC 775 Query 803 TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCa 861 ||||||||||||||| ||||||||||||||||||| |||| ||| ||||| || ||||| Sbjct 776 TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA 834 Query 862 aaaaaaGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA 920 |||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| Sbjct 835 TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA 893 Query 921 TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT 980 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 894 TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG---- 949 Query 981 TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA 1014 ||||||||||| ||||| ||||||||||||| Sbjct 950 ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA 980 > Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1 Length=941 Score = 750 bits (406), Expect = 0.0 Identities = 686/817 (84%), Gaps = 36/817 (4%) Strand=Plus/Plus Query 39 ATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCTACATCTCCAAT 98 |||||||| |||||||| | |||||||||||||||| |||||||||||||| |||| Sbjct 23 ATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGTGCACCACCCCTACATCGCCAAC 82 Query 99 TTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTT-TTTCGTATCCGTCGTAGT 157 || || |||| |||||||||||||||||||||||||||||| ||| || |||||||| || Sbjct 83 TTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGTCTTCTTT-GTCTCCGTCGTCGT 141 Query 158 CTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCACTCCCATCACT 217 || ||||||||||||||||| ||| ||||||||| | || | ||||||||||| || || Sbjct 142 TTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACACCGTGGATTCACTCCCCTCTCT 201 Query 218 CAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCTCTGTCTCCTCTC 277 | |||| || || ||||||||||||||||||||||||||||| || |||| ||||| || Sbjct 202 CGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAGCCTCATTCTCTCCCTCCTATC 261 Query 278 CTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGCGTCTTC-AGATC 336 |||| ||||||||| |||||||||||||| ||| |||| |||| || ||||| Sbjct 262 CTTAACCATGGCCGTTGGTTGCACTCTCTC-----CCTAATCT----CGTC-TCAAGATC 311 Query 337 CGATGGCGCGTTTCCTTC-ACG-CGATTTGCTTTCCC-GTCGACGTTAAACCTAACGGAC 393 ||| |||||| | |||| ||| || |||| |||||| ||||| || |||||||| |||| Sbjct 312 CGAAGGCGCGCCT-CTTCGACGCCG-TTTG-TTTCCCAGTCGATGTGAAACCTAAGGGAC 368 Query 394 CGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCGGAGACACGA 453 |||||||||| |||||||||||||| |||||||| |||||||| ||||||| |||||| | Sbjct 369 CGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCGTAGACAC-A 427 Query 454 -TCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGTACCACCAC 512 | |||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||| Sbjct 428 CTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCTACCACCAC 487 Query 513 GCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGTTTCCGA-T 571 || ||||||||| | |||| || |||||| | ||||| |||||||| ||||||||| | Sbjct 488 GCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGTTTCCGATT 547 Query 572 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 631 || ||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| Sbjct 548 TG-TCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTCCTCTGCGC 606 Query 632 CGTTGGATCGAGGCCCAAGTGGAAGA-GATTGGTGACGGATTGT-CAGATTGTTCAGTTT 689 |||||||||||||||||||||||||| | ||||||||| || || || |||||||||||| Sbjct 607 CGTTGGATCGAGGCCCAAGTGGAAGAAG-TTGGTGACGAAT-GTTCAAATTGTTCAGTTT 664 Query 690 GTTTTCAGTTTCGGGTTAT---CCGGTTGGATGCTCC-GAGAGCACTTATT-CGGGTCGG 744 |||||| | || |||||| ||| ||||||||||| | ||||| ||||| |||||| | Sbjct 665 GTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCG-GAGCA-TTATTTCGGGTCAG 722 Query 745 GTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGCTC 804 ||||| |||||||||||| | | | |||||| | || |||| ||||||||| ||||||| Sbjct 723 GTTGCTCCGGGATTTGGGCAAGTTATTTCAATGGTGTGTTTAGTGCTTCTCTCTTGGCTC 782 Query 805 TCTTTTCCAACTTCCATTC-AAAGAATTATGTCAAGA 840 |||| | |||||||||||| ||| || || || |||| Sbjct 783 TCTTCTACAACTTCCATTCCAAA-AACTACGTGAAGA 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40677152439 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5