BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06470.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1 1417 0.0
Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1 750 0.0
> Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1
Length=980
Score = 1417 bits (767), Expect = 0.0
Identities = 923/995 (93%), Gaps = 23/995 (2%)
Strand=Plus/Plus
Query 28 CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT 87
|||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1 CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT 60
Query 88 ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT 147
||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 61 ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT 120
Query 148 CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA 206
|||||| | ||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 121 CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA 179
Query 207 CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT 265
|| |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||
Sbjct 180 CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT 238
Query 266 CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC 325
||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 239 CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC 298
Query 326 GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC 384
|||||||||||||| |||||||||||| |||||||||| ||| ||| ||||||||||||
Sbjct 299 GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC 357
Query 385 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG 444
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG 417
Query 445 GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT 504
||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 418 GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 477
Query 505 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT 564
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT 537
Query 565 TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 624
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 597
Query 625 TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT 683
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 598 TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT 656
Query 684 CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC 742
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 657 CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC 715
Query 743 GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC 802
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC 775
Query 803 TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCa 861
||||||||||||||| ||||||||||||||||||| |||| ||| ||||| || |||||
Sbjct 776 TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA 834
Query 862 aaaaaaGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA 920
|||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 835 TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA 893
Query 921 TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT 980
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 894 TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG---- 949
Query 981 TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA 1014
||||||||||| ||||| |||||||||||||
Sbjct 950 ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA 980
> Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1
Length=941
Score = 750 bits (406), Expect = 0.0
Identities = 686/817 (84%), Gaps = 36/817 (4%)
Strand=Plus/Plus
Query 39 ATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCTACATCTCCAAT 98
|||||||| |||||||| | |||||||||||||||| |||||||||||||| ||||
Sbjct 23 ATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGTGCACCACCCCTACATCGCCAAC 82
Query 99 TTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTT-TTTCGTATCCGTCGTAGT 157
|| || |||| |||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct 83 TTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGTCTTCTTT-GTCTCCGTCGTCGT 141
Query 158 CTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCACTCCCATCACT 217
|| ||||||||||||||||| ||| ||||||||| | || | ||||||||||| || ||
Sbjct 142 TTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACACCGTGGATTCACTCCCCTCTCT 201
Query 218 CAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCTCTGTCTCCTCTC 277
| |||| || || ||||||||||||||||||||||||||||| || |||| ||||| ||
Sbjct 202 CGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAGCCTCATTCTCTCCCTCCTATC 261
Query 278 CTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGCGTCTTC-AGATC 336
|||| ||||||||| |||||||||||||| ||| |||| |||| || |||||
Sbjct 262 CTTAACCATGGCCGTTGGTTGCACTCTCTC-----CCTAATCT----CGTC-TCAAGATC 311
Query 337 CGATGGCGCGTTTCCTTC-ACG-CGATTTGCTTTCCC-GTCGACGTTAAACCTAACGGAC 393
||| |||||| | |||| ||| || |||| |||||| ||||| || |||||||| ||||
Sbjct 312 CGAAGGCGCGCCT-CTTCGACGCCG-TTTG-TTTCCCAGTCGATGTGAAACCTAAGGGAC 368
Query 394 CGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCGGAGACACGA 453
|||||||||| |||||||||||||| |||||||| |||||||| ||||||| |||||| |
Sbjct 369 CGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCGTAGACAC-A 427
Query 454 -TCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGTACCACCAC 512
| |||||||||||| |||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 428 CTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCTACCACCAC 487
Query 513 GCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGTTTCCGA-T 571
|| ||||||||| | |||| || |||||| | ||||| |||||||| ||||||||| |
Sbjct 488 GCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGTTTCCGATT 547
Query 572 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 631
|| ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 548 TG-TCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTCCTCTGCGC 606
Query 632 CGTTGGATCGAGGCCCAAGTGGAAGA-GATTGGTGACGGATTGT-CAGATTGTTCAGTTT 689
|||||||||||||||||||||||||| | ||||||||| || || || ||||||||||||
Sbjct 607 CGTTGGATCGAGGCCCAAGTGGAAGAAG-TTGGTGACGAAT-GTTCAAATTGTTCAGTTT 664
Query 690 GTTTTCAGTTTCGGGTTAT---CCGGTTGGATGCTCC-GAGAGCACTTATT-CGGGTCGG 744
|||||| | || |||||| ||| ||||||||||| | ||||| ||||| |||||| |
Sbjct 665 GTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCG-GAGCA-TTATTTCGGGTCAG 722
Query 745 GTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGCTC 804
||||| |||||||||||| | | | |||||| | || |||| ||||||||| |||||||
Sbjct 723 GTTGCTCCGGGATTTGGGCAAGTTATTTCAATGGTGTGTTTAGTGCTTCTCTCTTGGCTC 782
Query 805 TCTTTTCCAACTTCCATTC-AAAGAATTATGTCAAGA 840
|||| | |||||||||||| ||| || || || ||||
Sbjct 783 TCTTCTACAACTTCCATTCCAAA-AACTACGTGAAGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5