BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G06470.1

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1         1417    0.0  
  Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1          750    0.0  


> Ahg477952 jgi|Araly1|477952|fgenesh2_kg.3__653__AT3G06470.1
Length=980

 Score = 1417 bits (767),  Expect = 0.0
 Identities = 923/995 (93%), Gaps = 23/995 (2%)
 Strand=Plus/Plus

Query  28    CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT  87
             |||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct  1     CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT  60

Query  88    ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT  147
             ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct  61    ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT  120

Query  148   CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA  206
             |||||| | ||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct  121   CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA  179

Query  207   CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT  265
             || |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||
Sbjct  180   CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT  238

Query  266   CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC  325
             ||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct  239   CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC  298

Query  326   GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC  384
             |||||||||||||| ||||||||||||  |||||||||| ||| ||| ||||||||||||
Sbjct  299   GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC  357

Query  385   CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG  444
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  358   CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG  417

Query  445   GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT  504
             ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct  418   GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT  477

Query  505   ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT  564
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  478   ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT  537

Query  565   TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC  624
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  538   TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC  597

Query  625   TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT  683
             |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct  598   TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT  656

Query  684   CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC  742
             |||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct  657   CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC  715

Query  743   GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC  802
             ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  716   GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC  775

Query  803   TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCa  861
             ||||||||||||||| ||||||||||||||||||| |||| ||| |||||  || |||||
Sbjct  776   TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA  834

Query  862   aaaaaaGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA  920
              |||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct  835   TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA  893

Query  921   TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT  980
             |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
Sbjct  894   TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG----  949

Query  981   TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA  1014
                 ||||||||||| ||||| |||||||||||||
Sbjct  950   ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA  980


> Ahg477951 jgi|Araly1|477951|fgenesh2_kg.3__652__AT3G06460.1
Length=941

 Score =  750 bits (406),  Expect = 0.0
 Identities = 686/817 (84%), Gaps = 36/817 (4%)
 Strand=Plus/Plus

Query  39   ATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCTACATCTCCAAT  98
            ||||||||  |||||||| |  ||||||||||||||||  |||||||||||||| |||| 
Sbjct  23   ATGGCATCGGTTTACTCCACCCTAACCTACTGGCTCGTGCACCACCCCTACATCGCCAAC  82

Query  99   TTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTT-TTTCGTATCCGTCGTAGT  157
            || || |||| |||||||||||||||||||||||||||||| ||| || |||||||| ||
Sbjct  83   TTCACATGGACCGAAGGTGAAACCCTAGGCTCCACCGTCTTCTTT-GTCTCCGTCGTCGT  141

Query  158  CTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCACTCCCATCACT  217
             || ||||||||||||||||| ||| ||||||||| | || | ||||||||||| || ||
Sbjct  142  TTCTGTTTACCTCTCCGCCACATTCATCCTCCGATACACCGTGGATTCACTCCCCTCTCT  201

Query  218  CAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCTCTGTCTCCTCTC  277
            | |||| || || ||||||||||||||||||||||||||||| || ||||  ||||| ||
Sbjct  202  CGGTCCCCGCATTCTCAAACCGATCACAGCCGTCCACAGCCTCATTCTCTCCCTCCTATC  261

Query  278  CTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGCGTCTTC-AGATC  336
            ||||  ||||||||| ||||||||||||||     ||| ||||    |||| || |||||
Sbjct  262  CTTAACCATGGCCGTTGGTTGCACTCTCTC-----CCTAATCT----CGTC-TCAAGATC  311

Query  337  CGATGGCGCGTTTCCTTC-ACG-CGATTTGCTTTCCC-GTCGACGTTAAACCTAACGGAC  393
            ||| ||||||  | |||| ||| || |||| |||||| ||||| || |||||||| ||||
Sbjct  312  CGAAGGCGCGCCT-CTTCGACGCCG-TTTG-TTTCCCAGTCGATGTGAAACCTAAGGGAC  368

Query  394  CGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCGGAGACACGA  453
            |||||||||| |||||||||||||| |||||||| |||||||| ||||||| |||||| |
Sbjct  369  CGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCCAAGATCCTGGAGTTCGTAGACAC-A  427

Query  454  -TCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGTACCACCAC  512
             | ||||||||||||  |||||||||||| ||||| || ||||||||||| |||||||||
Sbjct  428  CTTCTCATCATACTCAACAAATCAATCCACCGGCTCTCGTTCCTCCACGTCTACCACCAC  487

Query  513  GCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGTTTCCGA-T  571
            || ||||||||| |  |||| || |||||| | ||||| ||||||||  ||||||||| |
Sbjct  488  GCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGCCAATCTTTGTTTCCGATT  547

Query  572  TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC  631
            ||  ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct  548  TG-TCTCGTGACGAACTCGACGGTCCATGTCATTATGTACGGTTACTACTTCCTCTGCGC  606

Query  632  CGTTGGATCGAGGCCCAAGTGGAAGA-GATTGGTGACGGATTGT-CAGATTGTTCAGTTT  689
            |||||||||||||||||||||||||| | ||||||||| || || || ||||||||||||
Sbjct  607  CGTTGGATCGAGGCCCAAGTGGAAGAAG-TTGGTGACGAAT-GTTCAAATTGTTCAGTTT  664

Query  690  GTTTTCAGTTTCGGGTTAT---CCGGTTGGATGCTCC-GAGAGCACTTATT-CGGGTCGG  744
            |||||| | || ||||||    ||| ||||||||||| | ||||| ||||| |||||| |
Sbjct  665  GTTTTCGGCTTGGGGTTAGGAGCCGTTTGGATGCTCCCG-GAGCA-TTATTTCGGGTCAG  722

Query  745  GTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGCTC  804
            ||||| |||||||||||| | | | |||||| | ||  |||| ||||||||| |||||||
Sbjct  723  GTTGCTCCGGGATTTGGGCAAGTTATTTCAATGGTGTGTTTAGTGCTTCTCTCTTGGCTC  782

Query  805  TCTTTTCCAACTTCCATTC-AAAGAATTATGTCAAGA  840
            |||| | |||||||||||| ||| || || || ||||
Sbjct  783  TCTTCTACAACTTCCATTCCAAA-AACTACGTGAAGA  818



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40677152439


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5