BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06483.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928292 jgi|Araly1|928292|scaffold_300749.1 1925 0.0
> Ahg928292 jgi|Araly1|928292|scaffold_300749.1
Length=1148
Score = 1925 bits (1042), Expect = 0.0
Identities = 1104/1135 (97%), Gaps = 0/1135 (0%)
Strand=Plus/Plus
Query 150 TCTCTTAGACGCTTATGGCAGTGAAGAAAGCCTGCGAAATGTTCCCGAAGAGTTTGATCG 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 TCTCTTAGACGCTTATGGCAGTGAAGAAAGCCTGCGAAATGTTCCCGAAGAGTTTGATCG 73
Query 210 AAGATGTTCACAAATGGGGTTGCATGAAGCAAACCGGTGTTAGCCTTAGATACATGATGG 269
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 74 AAGATGTTCACAAATGGGGTTGCATGAAGCAAACAGGTGTTAGCCTTAGATACATGATGG 133
Query 270 AGTTTGGTTCCAAACCTACTGAGAGGAATCTTTTGATTTCTGCTCAGTTTTTGCATAAGG 329
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 134 AGTTTGGTTCCAAACCTACTGAGAGGAATCTTTTGATTTCTGCTCAGTTTCTGCATAAGG 193
Query 330 AGCTTCCGATTCGCGTCGCCAGGAGAGCGATCGAACTCCAGACGCTTCCTTATGGTCTCT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AGCTTCCGATTCGCGTCGCCAGGAGAGCGATCGAACTCCAGACGCTTCCTTATGGTCTCT 253
Query 390 CTGATAAACCTGCCGTTTTGAAGGTGCGGGATTGGTATTTGGAATCTTTCAGGGACATGA 449
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 254 CTGAGAAACCTGCCGTTTTGAAGGTGCGAGATTGGTATTTGGAATCTTTCAGGGACATGA 313
Query 450 GAGCATTTCCTGAGATTAAGGATTCGGGTGACGAGAAAGATTTCACTCAGATGATTAAGG 509
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 314 GAGCATTTCCTGAGATTAAGGATTCCGGTGACGAGAAAGAATTCACTCAGATGATTAAGG 373
Query 510 CTGTCAAAGTAAGGCATAACAATGTGGTTCCCATGATGGCTTTGGGTGTTAATCAGCTCA 569
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 374 CTGTTAAAGTAAGGCACAACAATGTGGTTCCCATGATGGCTTTAGGTGTTAATCAGCTCA 433
Query 570 AGAAAGGAATGAATTCTGGAAATCTTGATGAGATTCATCAGTTTCTTGATCGTTTCTACT 629
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 434 AGAAAGGAATGAATTCCGGAAATCTTGATGAGATTCATCAGTTTCTTGATCGCTTCTACT 493
Query 630 TGTCGCGAATCGGGATCCGGATGCTTATTGGGCAGCACGTTGAGTTGCATAATCCAAATC 689
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 TGTCGCGAATTGGGATCCGTATGCTTATTGGGCAGCATGTTGAGTTGCATAATCCAAATC 553
Query 690 CACCGCTTCATACAGTGGGTTATATACACACAAAGATGTCTCCTATGGAGGTAGCAAGGA 749
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 554 CACCACTTCATACAGTGGGTTACATACACACAAAGATGTCTCCTATGGAGGTAGCAAGGA 613
Query 750 ATGCAAGTGAAGATGCTCGGTCAATTTGTTTCCGAGAGTACGGTTCTGCACCGGAAATAA 809
| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 614 ACGCCAGTGAAGATGCTCGCTCAATTTGTTTCCGAGAGTATGGTTCTGCACCGGAAATAA 673
Query 810 ACATATATGGCGATCCCAGTTTCACCTTTCCGTATGTTCCAACGCATTTGCATCTTATGA 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ACATATATGGCGATCCCAGTTTCACCTTTCCGTATGTTCCAACGCATTTGCATCTTATGA 733
Query 870 TGTATGAGCTAGTCAAGAACTCTCTACGTGCTGTCCAAGAGCGATTTGTTGACTCTGATA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TGTATGAGCTAGTCAAGAACTCTCTACGTGCTGTCCAAGAGCGATTTGTTGACTCTGATA 793
Query 930 GAGTTGCACCACCAATCCGCATTATAGTTGCTGATGGAATCGAAGATGTTACTATAAAGG 989
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 794 GAGTTGCACCACCAATCCGCATTATAGTTGCTGATGGAATTGAAGATGTTACAATAAAGG 853
Query 990 TCTCAGATGAAGGTGGAGGTATAGCAAGAAGCGGTCTTCCCAGAATATTCACCTATCTTT 1049
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 854 TCTCAGATGAAGGTGGAGGTATAGCGAGAAGCGGTCTTCCCAAAATATTCACCTATCTTT 913
Query 1050 ACAGCACTGCAAGAAACCCGCTTGAGGAGGATGTCGATTTAGGAATAGCTGATGTTCCCG 1109
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 914 ACAGCACTGCAAGAAACCCGCTTGAGGAGGAAGTCGATTTAGGAACAGCTGATGTTCCGG 973
Query 1110 TGACTATGGCTGGATATGGTTATGGTCTTCCAATTAGTCGCTTGTATGCTCGATATTTCG 1169
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 974 TGACTATGGCTGGGTATGGTTACGGTCTTCCAATTAGTCGCTTGTATGCTCGATATTTCG 1033
Query 1170 GTGGAGATTTGCAGATCATATCCATGGAAGGATATGGGACTGATGCATACTTGCACTTGT 1229
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1034 GTGGAGATTTGCAGATCATATCCATGGAAGGATATGGGACTGATGCTTACTTGCACTTGT 1093
Query 1230 CTCGCCTTGGAGATTCGCAAGAGCCTTTACCCTGAGAACATCTCTATGTCAGGCA 1284
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1094 CTCGCCTTGGAGATTCGCAAGAGCCTTTACCCTGAGAACATCTCCATGTCAGGCA 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5