BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06510.2
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477956 jgi|Araly1|477956|fgenesh2_kg.3__657__AT3G06510.1 1892 0.0
> Ahg477956 jgi|Araly1|477956|fgenesh2_kg.3__657__AT3G06510.1
Length=2117
Score = 1892 bits (1024), Expect = 0.0
Identities = 1112/1155 (96%), Gaps = 3/1155 (0%)
Strand=Plus/Plus
Query 54 TCATCGGCGATTATGGAATTATTCGCATTG-TTAATTAAGGTCGCCGGACTTTTGGCCAC 112
||||||||||||||||||||| |||||||| || |||||||||||||| ||| |||||||
Sbjct 55 TCATCGGCGATTATGGAATTAGTCGCATTGCTT-ATTAAGGTCGCCGGTCTTGTGGCCAC 113
Query 113 TGTCACCGTTGGAGCCAACGTAGTTTCCTACTCTCGTTTCCGTCGCCAGAATCTCGCGAA 172
| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 114 TATCACCGTTGGAGCCAACGCATTTTCCTACTCTCGGTTCCGTCGCCAGAATCTCGCGAA 173
Query 173 GTTTCGCTCTCCAATCGACGAATCTAAAGAAGTTCTCGCTGATTTCAATTCCATTGAACA 232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 174 GTTTCGCTCTCCAATCGACGAATCTAAAGAAGTTCTCGCCGATTTCAATTCCATTGAACA 233
Query 233 CGAGGAAGGAAAATTCTTCTTTGGGTTAGCTACTGCACCTGCTCATGCGGAGGATGATTT 292
| ||||||| || |||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 234 CAAGGAAGGCAAGTTCTTCTTTGGGTTGGCTACTGCACCTGCTCATGTGGAGGATGATCT 293
Query 293 AGATGATGCTTGGCTCCAGTTTGCTAAAGAAACACCATGTTCAGCAGAAGAAGCAGAGGC 352
|||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||
Sbjct 294 AGATGATGCTTGGCTCCAGTTTGCAAAAGAAACTCCATGTTCAGCATCAGATGCAGAGGC 353
Query 353 TGCTGATAAGAAAGCTAGGAGGAAGAAGGTTAAGCTTGCTGTGGGAGCTATAACCAAAGG 412
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGCTGATAAGAAAGCTAAGAGGAAGAAGGTTAAGCTTGCTGTGGGAGCTATAACCAAAGG 413
Query 413 CTTGGCCAAGAACACTCATGGCAAAGAAGATAAGAATGCAGCTGATAAGCCACCCTCTAA 472
||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 414 CTTGGCCAAGAACTCACATGGAAAAGAAGATAAGACTGCAGCTGATAAGCCACCCTCTAA 473
Query 473 AAATGTTGCCGCGTGGCATAACGCTCCTCACGCGGAGGACAGGCTTAAATTTTGGTCAGA 532
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 AAATGTGGCTGCGTGGCATAACGCTCCTCACGCCGAGGACAGGCTTAAATTTTGGTCAGA 533
Query 533 TCCTGACAAAGAAGTGAAGCTAGCCAAAGATACTGGCGTTACTGTCTTTAGGATGGGAGT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCCTGACAAAGAAGTGAAGCTAGCCAAAGATACTGGCGTTACTGTCTTTAGGATGGGAGT 593
Query 593 CGATTGGTCTAGGATCATGCCAGTTGAGCCCACCAAAGGAATTAAGGAAGCAGTTAACTA 652
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 594 CGATTGGTCTAGGATCATGCCAGTAGAGCCTACCAAAGGAATTAAGGAAGCAGTTAACTA 653
Query 653 TGAGGCTGTCGAACACTATAAATGGATACTTAAAAAAGTTCGTTCAAATGGAATGAAGGT 712
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 TCAGGCTGTCGAACACTATAAATGGATACTTAAAAGAGTTCGTTCAAATGGAATGAAGGT 713
Query 713 GATGCTAACGCTGTTTCATCATTCATTGCCACCATGGGCAGCTGACTATGGTGGCTGGAA 772
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 GATGCTAACGCTGTTTCATCATTCATTGCCACCATGGGCAGCTGATTATGGTGGCTGGAA 773
Query 773 AATGGAGAAGACAGTCGACTACTTTATGGACTTTACCAGGATTGTTGTGGATTCCATGTA 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AATGGAGAAGACAGTCGACTACTTTATGGACTTTACCAGGATTGTTGTGGATTCCATGTT 833
Query 833 TGATTTGGTAGACTCTTGGGTAACATTTAATGAACCCCATATCTTCACCATGCTTACCTA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGATTTGGTAGACTCTTGGGTAACATTTAATGAACCCCATATCTTCACCATGCTTACCTA 893
Query 893 CATGTGTGGATCTTGGCCCGGTAACAACCCTGATTTTCTGGAGATAGCTACATCTACTCT 952
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 894 CATGTGTGGGTCTTGGCCCGGTAACAACCCTGATTTTCTGGAGATTGCTACATCTACTCT 953
Query 953 ACCAATGGGTGTATTCCATCGAGCCTTACACTGGATGGCTGTTGCTCACTCAAAGGCCTA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ACCAATGGGTGTATTCCATCGAGCCTTACACTGGATGGCTGTTGCTCACTCAAAGGCCTA 1013
Query 1013 TGACTACATCCATGGGAAAATTTCTTTGAAAAAACCTTTGGTAGGGGTTGCGCACCACGT 1072
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1014 TGACTACATCCATGGGAAAATTTCCTTGAAAAAACCTTTGGTAGGTGTTGCGCACCACGT 1073
Query 1073 CTCCTTTATGCGACCATATGGGCTCTTTGATATCGGGGCTGTTACCATTAGTAATTCCCT 1132
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1074 CTCCTTTATGCGACCATATGGGCTCTTTGATATCGGGGCCGTTACTATTAGTAATTCCCT 1133
Query 1133 CACTATATTTCCATATATCGATAGCATTTGTGAGAAGTTGGATTTCATAGGCATCAACTA 1192
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CACTCTATTTCCATATATCGATAGCATTTGTGAGAAGTTGGATTTCATAGGCATCAACTA 1193
Query 1193 CTACGGACAGGTAAG 1207
||||||||||| |||
Sbjct 1194 CTACGGACAGG-AAG 1207
Score = 1297 bits (702), Expect = 0.0
Identities = 820/874 (94%), Gaps = 19/874 (2%)
Strand=Plus/Plus
Query 1302 CAGGAAGCAGTGTGTGGTGCTGGACTAAAGCTTGTAGAGACTGATGAATACAGTGAATCG 1361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAGGAAGCAGTATGTGGTGCTGGACTAAAGCTTGTAGAGACTGATGAATACAGTGAATCT 1260
Query 1362 GGAAGAGGGGTATATCCTGATGGTCTCTACCGCGTGTTGTTGATGTTCCACGAGAGATAC 1421
||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1261 GGAAGAGGGGTGTATCCTGACGGACTCTACCGGGTGTTGTTGATGTTCCACGAGAGATAC 1320
Query 1422 AAACACCTGAAAGTTCCTTTTATCGTCACAGAAAATGGCGTGTCTGATGAAACAGATGTG 1481
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 AAACACCTGAAAGTTTCTTTCATCGTCACAGAAAATGGTGTGTCTGATGAAACAGATGTG 1380
Query 1482 ATTCGACGACCTTACCTGATCGAGCATCTCCTTGCCTTATATGCTGCAATGCTAAAGGGT 1541
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1381 ATTCGACGACCTTACCTGATCGAGCATCTCCTTGCCCTATATGCTGCAATGCTAAAGGGT 1440
Query 1542 GTTCCTGTGCTCGGTTACATATTCTGGACTATTTCGGACAATTGGGAATGGGCTGATGGA 1601
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1441 GTTCCTGTGCTCGGTTACATATTCTGGACTATTTCCGACAACTGGGAATGGGCTGATGGA 1500
Query 1602 TATGGTCCAAAATTTGGACTTGTTGCGGTTGACCGATCCCATGATCTTGCCCGAACTCTT 1661
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1501 TATGGTCCAAAATTTGGACTTGTTGCGGTTGACCGATCCCATAATCTTGCCCGAACCCTT 1560
Query 1662 CGGCAATCATACCATCTCTTTTCCAAGATAGTTAAAAGTGGAAAAGTCACTCGGAAAGAT 1721
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1561 CGGCCATCGTACCATCTCTTTTCCAAGATAGTTAAAAGTGGAAAAGTCACTCGTAAAGAC 1620
Query 1722 CGGTCTCTTGCATGGAACGAACTCCAAAAAGCTGCCAAAGCAGGAAAACTACGGCCATTC 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CGGTCTCTTGCATGGAACGAACTCCAAAAAGCTGCCAAAGCAGGAAAACTACGGCCATTC 1680
Query 1782 TACCGAGGCGTTGATAATCATAATCTTATGTACGCAGATGGTCTCGACAAGCCTCAATGG 1841
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TACCGAGCCGTTGATAATCATAATCTTATGTACGCAGATGGTCTCGACAAGCCTCAATGG 1740
Query 1842 AGACCGTTTGTTGACCGCGACTGGCGGTTTGGTCACTACCAAATGGATGGTCTTCAAGAC 1901
||||||||||| || || ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1741 AGACCGTTTGTCGATCGTGACTGGCGGTTTGGTCATTACCAAGTGGATGGTCTTCAAGAC 1800
Query 1902 CCGTTGAGTCGCGTGGCTCGAACCCTTCTCATATGGCCGCTTATCATGAAAAAGAGGATA 1961
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1801 CCATTGAGTCGCGTGGCTCGAACCCTTCTCATATGGCCACTAATCATGAAAAAGAGGATA 1860
Query 1962 AGAAAAGTTAAGATCAAGCACACCGATGATGCTGGGCTTGTTCTACATCCTGCTTTAGCC 2021
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1861 AGAAAAGTTAAGATAAAGCACACCGATGATGCTGGGCTCGTTCTACATCCCGCTTTAGCC 1920
Query 2022 TCACCCTTTGACTAGAGAAAGAG-GTAGAAGAAATCCGAGTGTACAAACTCATTTCCCTG 2080
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 1921 TCACCCTTTGACTAGAGAAAGAGAGTAGAAGAAACCCGAGTGTACAAACTCTTTTCCCTG 1980
Query 2081 TATGATTTGCCAAACCTTTGGGCCTTTGGCGCCATTAGAGACGATTCACCGTTTTGTTGT 2140
|| ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 1981 TACGATTTGCCAAAACTTTGGG-----------A-------CGATTCACCGTTTTGTTGT 2022
Query 2141 TAATGTTTAAATAAAGGCAAAACGGCATGATGTT 2174
||||||||||||||||||||||||||| ||||||
Sbjct 2023 TAATGTTTAAATAAAGGCAAAACGGCACGATGTT 2056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82046387730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5