BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06540.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928298 jgi|Araly1|928298|scaffold_300755.1 2765 0.0
Ahg905455 jgi|Araly1|905455|Al_scaffold_0003_2583 100 3e-20
> Ahg928298 jgi|Araly1|928298|scaffold_300755.1
Length=1728
Score = 2765 bits (1497), Expect = 0.0
Identities = 1658/1735 (96%), Gaps = 14/1735 (1%)
Strand=Plus/Plus
Query 108 CAAATCTGTTCGAGCCACCATGATCGACATCCCTCCTTACCCGCCGCTTGATCCTTCCAA 167
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2 CAAATCGGTTCGAGCCACCATGATCGACATCCCTCCTTACCCGCCGCTTGACCCTTCTAA 61
Query 168 CTACGATCTCATTGTCGTCGGCACCGGAGTCTCTGAGTCCGTCTTAGCCGCCGCTGCTTC 227
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTACGATCTCATCATCGTCGGCACCGGAGTCTCTGAGTCCGTCTTAGCCGCCGCTGCTTC 121
Query 228 CTCCTCCGGTAGTTCTGTTCTCCACCTCGACCCTAACCCCTTCTACGGCTCTCACTTCGC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTCCTCCGGTAGTTCTGTTCTCCACCTCGACCCTAACCCCTTCTACGGCTCTCACTTCGC 181
Query 288 CTCTCTTTCCCTTCCCGATCTCACTTCTTtccttcactcaaactccgtttctcctcctcc 347
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 182 CTCTCTTTCTCTTCCCGATCTCACTTCTTTCCTTCACTCAAACTCCTTTTCTTCTCCTCC 241
Query 348 gtcgccgtcatctcctcctctccctccgtcaAACAACCATGATTTTATCTCCGTGGATCT 407
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 242 GCCGCCGTCATCTCCTCCTCTCCCTCCGTCAAACAACCATGATTTCATCTCCGTGGATCT 301
Query 408 CGTTAACCGATCCTTGTATTCCTCCGTGGAGATTTCGAGCTTCGAATCGGAGATCCTCGA 467
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 302 CGTTAACCGATCCTTGTATTCCCCCGTTGAGATTTCGAGCTTCGAATCGGAGATCCTCGA 361
Query 468 AGAACACTCTAGAAGATTCAACGTTGACTTG-GCTGGTCCTAGGGTTGTCTTCTGTGCCG 526
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 362 AGAACACTCTAGAAGATTCAACGTTGACTTGTG-TGGTCCTAGGGTTGTCTTCTGTGCCG 420
Query 527 ATGAATCAATTAATCTCATGCTGAAATCAGGAGCTAACAACTACGTTGAGTTCAAGAGCA 586
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 421 ATGAATCAATTAATCTCATGTTGAAATCAGGAGCTAACAATTACGTTGAGTTCAAGAGTA 480
Query 587 TCGATGCCAGCTTCGTTGGGGATTCGAGCGGTGAGCTACGAAATGTGCCGGATTCGAGAG 646
|||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TCGACGCGAGCTTCGTCGGGGATTCGAGCGGTAAGCTACGAAATGTGCCGGATTCGAGAG 540
Query 647 CTGCTATATTCAAGGACAAGAGCTTGACTCTGTTGGAGAAGAATCAGCTCATGAAATTCT 706
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 CTGCGATTTTCAAGGACAAGAGCTTGACTCTGTTGGAGAAGAATCGGCTCATGAAATTCT 600
Query 707 TCAAGCTTGTTCAAAGTCACTTGGCTTCTTCTACCGAAAAAGATGATTCAACAACAGTCA 766
||||||||||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||
Sbjct 601 TCAAGCTTGTTCAGAGTCACTTGGCTTCGTCTACGGAAAATGATGATACAACAACAGTCA 660
Query 767 AGATATCGGAGGAAGATATGGAGAGTCCATTTGTGGACTTCTTGTCAAAGATGCGTTTAC 826
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 661 AGATATCGGAGGAAGACATGGAGAGTCCATTTGTGGACTTCTTGACAAAGATGCGTTTGC 720
Query 827 CACCCAAAATCAAATCGATCATCTTGTATGCCATTGCGATGCTAGATTATGATCAAGACA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CACCCAAAATCAAATCGATCATCTTGTATGCCATTGCGATGCTAGATTATGATCAAGACA 780
Query 887 ATACGGAAACTTGTAGACATTTACTCAAGACCAAAGAGGGGATAGATCGATTGGCTCTAT 946
||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 781 ATATGGAAACTTGTAGACATTTACTCAAGACCAAAGAGGGCATAGATCGAATGGCTCTAT 840
Query 947 ACATCACATCTATGGGCAGGTTTTCTAACGCACTTGGGGCGTTGATATACCCAATTTATG 1006
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 ACATCATATCTATGGGCAGGTTTTCTAACGCACTTGGGGCATTGATATACCCAATTTATG 900
Query 1007 GACAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 960
Query 1067 TTCTCCGGATGCCTATTACTGCTCTGCTTTTAGACAAGGAAACTGGGGGTTACAAAGGGG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCTCCGGATGCCTATTACTGCTCTGCTTTTAGACAAGGAAACTGGGGGTTACAAAGGGG 1020
Query 1127 TTAGATTAGCTTCTGGTCAAGAGATATTCAGCCAAAAGTTGATTCTGGATCCATGTGTTA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTAGATTAGCTTCTGGTCAAGAGATATTCAGCCAAAAGTTGATTCTGGATCCATGTGTTA 1080
Query 1187 CTGTTGGATTAGAGTCTCTGTCGTCATTGACAGATCAGCAAAATGAAACTCTCAGTGTTC 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGTTGGATTAGAGTCTCTGTCGTCATTGACAGATCAGCAAAATGAAACTCTCAGTGTTC 1140
Query 1247 TTGTCCCAAAGTCGATGATCAATAAGGAGAAAATTGCAAGAGGAGTATGCGTCATTAGAG 1306
||||||||||| || ||||||||||||||||| | ||||||||| |||| ||||||||||
Sbjct 1141 TTGTCCCAAAGGCGTTGATCAATAAGGAGAAAGTAGCAAGAGGAATATGTGTCATTAGAG 1200
Query 1307 GTTCTGTGAAAGCTAATGTATCAAACGCTCTTGTCGTTTATCCACCTAAATCTTTGTTTC 1366
|||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1201 GTTCTGTGAAAGCTGATGTATCAAACGCTCTTATCGTATATCCACCTAAATCTTTGTTTC 1260
Query 1367 CAGAACAGCTAACTGCAATTCGGGTTCTGCAGCTTGGTAGTGGTTTAGCGGTTTGTCCTG 1426
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1261 CTGAACAGCTAACTGCAATTCGGGTTATGCAGCTTGGTAGTGGTTTAGCGGTTTGTCCTG 1320
Query 1427 CTGACATGCATGTTTTATATCTTTCAACTTTGTGCGACAATGATGACCAAGGGATAAAGG 1486
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1321 CTGACATGCATGTTTTATATCTTTCAACTTTGTGTGACAACGATGACCAAGGGATAAAGT 1380
Query 1487 CGCTATTATCAGCCATGAGTAATCTCATCAGTTTGCCTGTTCCCGAGAATCGTCAAAGCG 1546
|||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||
Sbjct 1381 CGCTATTATCAGCCATGAGTAATCTCATTAGATTGCCTGATCCCGAGAATCATCAAAGCG 1440
Query 1547 ATTCCGTTGTTGAGAATGATACTTCTGAGACAAAACCTATTCTACTCTGGAGAGCACTGT 1606
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 1441 ATTCCGTTGTTGAGAATGATACTTGTGAGGCAAAACCTATTCTACTCTGGAGAGCACTAT 1500
Query 1607 ACGTGCAAGAGCTAGTCAAGGGTGAATTTGGAGGTACGATCAGTTCCATGCCTAGTCCAG 1666
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1501 ACGTGCAAGAGCTAGTCAAGGGTGAATATGGAGGTACTATCAGTTCCATGCCTAGTCCAG 1560
Query 1667 ATGGAAACTTGAACTACAATGAGATAGTGGAATCAGCCGTGAAGCTATATGAA-AAGCTC 1725
||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1561 ATGGAAATTTGAACTACAATGAGATAGTGGAATCAGCCTTGAAGCTATATGAACAA-CTC 1619
Query 1726 ATGGGGAGTGAAGAATTATTTAAAGAAGAGACCTCACCGGCGGAGAACACAACGGAGGAG 1785
|||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1620 ATGGGGAGTGAAGAATTATTTAAAGAAGAGACCTCA--GT-GGAAAACACAACGGAGGA- 1675
Query 1786 GAAAACGATGGTGGTGTTGAAATAGAAGATTGATTGAT-GA---ATGAAACCATT 1836
||| ||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1676 -AAA-CGATGGTGGTGTTGACATAGAAGATTGATTGATTGATTGATGAAACCATT 1728
> Ahg905455 jgi|Araly1|905455|Al_scaffold_0003_2583
Length=207
Score = 100 bits (54), Expect = 3e-20
Identities = 57/58 (98%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 1009 CAAGGAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 1066
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 CAA-GAGAACTTCCACAAGCCTTTTGTCGTCGGGCTGCTGTCAAAGGATGTATCTATG 97
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5