BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06610.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477968 jgi|Araly1|477968|fgenesh2_kg.3__669__AT3G06610.1 830 0.0
Ahg928434 jgi|Araly1|928434|scaffold_300891.1 320 8e-87
Ahg359763 jgi|Araly1|359763|fgenesh1_pg.C_scaffold_908000001 163 1e-39
> Ahg477968 jgi|Araly1|477968|fgenesh2_kg.3__669__AT3G06610.1
Length=515
Score = 830 bits (449), Expect = 0.0
Identities = 495/517 (96%), Gaps = 4/517 (1%)
Strand=Plus/Plus
Query 76 AGAGAGAAGAGAAGAAATT-GAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAG 134
||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGATAAGAGAA-AAGTTAGAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAG 59
Query 135 CGGTTGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTG 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGGTTGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTG 119
Query 195 TCGAGGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCGAGGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTT 179
Query 255 CTAGGGAGGCTGATCTGAATGCTAAGAGGTTGAGGGAGAAAGAACTGGCCTCTGTGAAGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTAGGGAGGCTGATCTGAATGCTAAGAGGTTGAGGGAGAAAGAACTGGCCTCTGTGAAGA 239
Query 315 TCAATCCTGCAGATGTTGAGTTTATTGTAAACGAACTTGAGATAGAAAAGAATGTGGCGG 374
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TCAATCCTGCAGATGTTGAGTTTATTGTAAACGAACTCGAGATAGAAAAGAATGTGGCGG 299
Query 375 AAAGAACTCTAAGGGAGCACAAAGGTGATGCGGTTGCTGCGACTAGGCAATTGCTTTCAC 434
||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 300 AAAGAACTCTAAGGGAGTACAATGGTGATGCGGTTGCTGCAACTAGGGAATTGCTTTCAC 359
Query 435 GATATCCTCTATGATGGAGCAGGACCATTCT-TTACTTCCAAGGTTTTTTGTATGTTTGA 493
|||||||||||||||||| |||||| ||| | ||||||||||||||||| || ||||| |
Sbjct 360 GATATCCTCTATGATGGACCAGGACTATT-TATTACTTCCAAGGTTTTTGGTTTGTTTAA 418
Query 494 GAGGTTGAGAGCAAGTCTCCTAATATTTAACCGAGTTAAAATTGTCTATTGCTGAACCGA 553
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |
Sbjct 419 GAGGTTGAGAGCAAGTCTCCTAATACTTAACCGAGTTGAAATTGTCTATTGCTGAATCAA 478
Query 554 TCTCTCTGAGAAGCCCTGAATACAGTTACAATCGATT 590
||||||||||||||||||||||||| |||||| ||||
Sbjct 479 TCTCTCTGAGAAGCCCTGAATACAGATACAATAGATT 515
> Ahg928434 jgi|Araly1|928434|scaffold_300891.1
Length=235
Score = 320 bits (173), Expect = 8e-87
Identities = 194/204 (95%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 80 AGAAGAGAAGAAATT-GAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAGCGGT 138
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGAGAAG-AGTTAGAAGCAATGGAGGGAGCAGAGGAAGCTGGGGCTGAGATAGCGGT 59
Query 139 TGATTCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGA 198
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 AGATTCAAAGGACTTGCAGCAACATAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGA 119
Query 199 GGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTTCGATTGCTGCTTCTAG 258
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 120 GGATCGCCAGCTCGATTCCTCTCGTGTTCAATCGGCTATGGCTACAATTGCTGCTTCTAG 179
Query 259 GGAGGCTGATCTGAATGCTAAGAG 282
| ||| |||||| |||||||||||
Sbjct 180 GAAGGTTGATCTAAATGCTAAGAG 203
> Ahg359763 jgi|Araly1|359763|fgenesh1_pg.C_scaffold_908000001
Length=1359
Score = 163 bits (88), Expect = 1e-39
Identities = 90/91 (99%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 143 TCAAAGGACTTGCAGCAACAAAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGAGGAT 202
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TCAAAGGACTTGCAGCAACATAGCAAAGCTTTCGACAAGCTCACCGATCGTGTCGAGGAT 1300
Query 203 CGCCAGCTCGATTCCTCTCGTGTTCAATCGG 233
|||||||||||||||||||||||||||||||
Sbjct 1299 CGCCAGCTCGATTCCTCTCGTGTTCAATCGG 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5