BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06730.1 Length=908 Score E Sequences producing significant alignments: (Bits) Value Ahg477988 jgi|Araly1|477988|fgenesh2_kg.3__689__AT3G06730.1 1009 0.0 > Ahg477988 jgi|Araly1|477988|fgenesh2_kg.3__689__AT3G06730.1 Length=691 Score = 1009 bits (546), Expect = 0.0 Identities = 594/618 (96%), Gaps = 0/618 (0%) Strand=Plus/Plus Query 1 TCTAAAACCCCTCAAAAGCTAAAACTGAAATCATTTTGAAGCAGAAATCGATTTCCAAAA 60 |||||||||| | |||||| |||||||||||||||| | || || ||||||||||| ||| Sbjct 1 TCTAAAACCCGTAAAAAGCGAAAACTGAAATCATTTAGCAGTAGTAATCGATTTCCGAAA 60 Query 61 TGGCTCTTGTTCAATCCAGAACTTTTCCACACCTCAACACTCCGTTATCGCCGATTCTAT 120 ||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||| Sbjct 61 TGGCTCTTGTTCAATCCAGAACTCTTCCACATCTCAACGCTCCGTTGTCGCCGATTCTAT 120 Query 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTATCCGGAGGGAAATCCGACCGGTAGCCGCGC 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 121 CCTCCCTCCATGCTCCGTCTTCTCTCTTTCTCCGGAGGGAAATCCGACCGGTAGCCTCGC 180 Query 181 CGTTCTCCTCCTCCACCGCCGGAAACTTGCCCTTCTCGCCGTTGACGCGTCCGCGAAAGC 240 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 181 CGTTCTCCTCCTCCACTGCCGGAAAGTTGCCCTTCTCGCCGTTGACGCGTCCGCGGAAGC 240 Query 241 TTCTCTGTCCTCCGCCTCGCGGCAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCTCTGTCCTCCGCCTCGCGGAAAGTTTGTCAGAGAAGATTATCTTGTGAAGAAATTGT 300 Query 301 CAGCTCAAGAACTTCAGGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CAGCTCAAGAACTTCAAGAACTGGTGAAAGGAGATAGGAAGGTGCCGTTGATTGTTGATT 360 Query 361 TTTATGCGACATGGTGTGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTTATGCGACATGGTGCGGACCTTGTATCTTGATGGCCCAGGAACTAGAAATGCTTGCAG 420 Query 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTTGATACAGATGATGAGTACGAGTTTG 480 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 TAGAGTATGAGAGCAATGCAATAATCGTGAAAGTCGATACAGATGATGAGTACGAGTTTG 480 Query 481 CACGCGACATGCAGGTTCGAGGGTTACCTACATTATTCTTCATCAGTCCTGACCCAAGCA 540 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 481 CACGCGACATGCAGGTTCGAGGCTTACCTACATTATTCTTCATCAGTCCTGATCCAAGCA 540 Query 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCGTTACAGATGATGCACGATATCATTGACA 600 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 541 AAGATGCAATCAGGACAGAAGGGCTAATTCCATTACAGATGATGCACGATATCATTGACA 600 Query 601 ACGAGATGTGAAGTTTTT 618 |||||||||||||||||| Sbjct 601 ACGAGATGTGAAGTTTTT 618 Score = 111 bits (60), Expect = 7e-24 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 649 TTTGATTAGAATCGCCGTAATTTAGGATTGGTACCGTGTTGTTTGCATTTGAGATGTGGT 708 ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 617 TTTGAATAGAATCGCCGTAATTTAGGATTGGTACCGAGTTGTTTGCATTTGATATGTGGT 676 Query 709 AAGAATGTCTTCTAG 723 ||||| ||| ||||| Sbjct 677 AAGAACGTCATCTAG 691 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33662535711 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5