BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G06750.1 Length=693 Score E Sequences producing significant alignments: (Bits) Value Ahg477990 jgi|Araly1|477990|fgenesh2_kg.3__691__AT3G06750.1 839 0.0 Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1 102 3e-21 > Ahg477990 jgi|Araly1|477990|fgenesh2_kg.3__691__AT3G06750.1 Length=641 Score = 839 bits (454), Expect = 0.0 Identities = 541/580 (93%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 13 tctctctctct-tttcttctttcatcttctctcttcCTTATCACTTGACTTTAGTCCAAA 71 ||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 TCTCTCTCTCTCTTT-TGCTTTCATCTTCTCTCTTCCTTATCACTTGATTTTAGTCCAAA 59 Query 72 TCTCTAGCTCATTTGTCAGACAAC-AAATTTCTGACAATGGAAGCAATCAGATTCTCTAA 130 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || Sbjct 60 TCTCTAGCTCATTTGTCAGACAACAAAATTTCCGACAATGGAAGCAATCAGATTCTCGAA 119 Query 131 TTTGTCAGGTCTTCTTATTCTCTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACGA 190 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | Sbjct 120 TTTGTCAGGTCTTCTTATACTGTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACCA 179 Query 191 AACTGTTTCTTGCACAATGTGTTCCTCTTGCGACAATCCATGTAATCCTGTCCCATCTTC 250 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 AACTATTTCTTGCACAATGTGTTCCTCTTGCGACAATCCTTGTAATCCTGTCCCATCTTC 239 Query 251 TTActctcctcctcctcctccGCCATCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 310 ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 TTA--CT-CTCCTCCTCCTCCGCCTTCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 296 Query 311 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGTTAAATACCCGCCTCCGTACGGCGGCGACGG 370 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 297 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGCTAAATACCCGCCTCCGTACGGTGGCGACGG 356 Query 371 CTACGGTGG-C-----TA-T-T-ATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 421 |||||||| | || | | ||||||||||||||||||||||||||||||||||||| Sbjct 357 ATACGGTGGACAAGGCTACTATTATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 416 Query 422 ACCACCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCCTCCTCAGGGATA 481 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 417 ACCGCCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCACACTCCTCCTCAGGGAAA 476 Query 482 TTCAGGCTCGGCTCGTTTACA-GAATTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 540 ||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 477 TTCTGGTTCGGCTCGCTTACATGA-TTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 535 Query 541 GTTTTGTGTGACGGCGATTCATCTGTATTTGGCCGGGAAA 580 ||||||||| |||| ||||||||||||||| ||||||||| Sbjct 536 GTTTTGTGTAACGGAGATTCATCTGTATTTAGCCGGGAAA 575 > Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1 Length=853 Score = 102 bits (55), Expect = 3e-21 Identities = 168/220 (76%), Gaps = 17/220 (8%) Strand=Plus/Plus Query 257 tcctcctcctcctccGCCAT-CAAGCTCCGGTGGCGGTGGATCTTATTATTACTCTCCTC 315 |||||| |||||| | || | ||||||||||||||||| | ||||| ||||| | |||| Sbjct 310 TCCTCCCCCTCCTTCTCC-TCCAAGCTCCGGTGGCGGTAGCTCTTACTATTA--C-CCTC 365 Query 316 CTCCTCCTTCAAGCTCCGGT---GGTGTTAAATACCCGCCTCCGTACGGCGGCGACGGCT 372 ||||| | || || |||||| || | |||||||| || || ||||| |||| || | Sbjct 366 CTCCTTC-TC-AG-TCCGGTGGAGGCGGCAAATACCCTCCACCTTACGGTGGCGGTGG-T 421 Query 373 -ACGGTGGCTATTATCCGCCTCCTTACTAC-GGCAATTA-CGGGACACCACCACCACCGA 429 | ||| || ||||| || || || | | || || || | | || || || |||| Sbjct 422 CAAGGTTATTACTATCCTCCGCCGTA-TTCAGGAAACTATC-CTATGCCGCCTCCGCCGA 479 Query 430 ATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCC 469 |||||||||| ||||||||||||||||||||||||||||| Sbjct 480 ATCCGATCGTCCCTTATTTTCCGTTTTACTATCATACTCC 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25466108556 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5