BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G06950.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478015 jgi|Araly1|478015|fgenesh2_kg.3__716__AT3G06950.1 1692 0.0
Ahg951777 jgi|Araly1|951777|scaffold_15900006.1 1014 0.0
> Ahg478015 jgi|Araly1|478015|fgenesh2_kg.3__716__AT3G06950.1
Length=1171
Score = 1692 bits (916), Expect = 0.0
Identities = 1116/1206 (93%), Gaps = 40/1206 (3%)
Strand=Plus/Plus
Query 7 GCATTAAACCAAATCAATCTAATAACCAATGGTCCGGTCTGACCAATTTACCGCTCCCTA 66
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 3 GCATAAAACCAAATCAATCTAATAACCATTGGTCCGGGCTGACCAATTTACCGCTCCCTA 62
Query 67 ACTAACCGTATACGCACCGTTTTAAAGTCTTTCCCTAATCAGAATCTTGAGATTACACAG 126
||||||||||||||||||||||| | ||| ||||| || | ||||||||||||||||
Sbjct 63 ACTAACCGTATACGCACCGTTTTTATGTCCTTCCC----CA-A-TCTTGAGATTACACAG 116
Query 127 AGAGACAGGGCAGCAAACAaagaagaagaagaagaagaagaagaagaagaagaagaGGAT 186
|||| | | || || | ||||||||||||||||| | || |
Sbjct 117 AGAG-C-G--CA--AA-C---GAAGAAGAAGAAGAAGA-G--GA---------------T 148
Query 187 GAGTTGCGTTACACCAGCACTTCCTCCTTCACTCTTTACTAATGGGTATCTTTCGTCTCC 246
|||||||| ||||| ||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 149 GAGTTGCGCTACACGAGCGCTTCCTCCTTCACTCTTTACCAATGGGTCTCTTTCGTCTCC 208
Query 247 TCAGAATATCTCCATGACCAACTTGAACAGTTCGGTAAAGGTTAGTGATTCTGGTGCTTA 306
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 209 TCATAATATCTCCATGACCAACTTGAACAGTTTGGTAAAGGTTAGTGATTCTGGTGCTTA 268
Query 307 TAAATGGCGCCTTGTGATAGCCTACGATGGCACCCGTTTTGCAGGTTGGCAGTATCAGGA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TAAATGGCGCCTTGTGATAGCCTACGATGGCACCCGTTTTGCAGGTTGGCAGTATCAGGA 328
Query 367 GTCACCACCAACTATCCAATCAATGTTAGAAAAAGCCTTAATTCAGATTACAGAGCTCGG 426
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 329 GTCACCACCAACTATCCAATCAATGTTAGAGAAAGCCTTAATTCAGATAACGGAGCTCGG 388
Query 427 TAGAAAAGAGCTTCAGCTTATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGG 486
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 389 AAGAAAAGAGCTTCATCTAATTGGAGCTGGCAGGACCGATGCAGGAGTTCACGCTTGGGG 448
Query 487 TCAGGTAGCTCATTTTGTCACTCCTTTCAACTATACTAGTTTGGATAGCTTTCACGCTGC 546
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 449 TCAGGTTGCTCATTTTGTCACTCCTTTTAATTATACTAGTTTGGATAGCTTTCACGCTGC 508
Query 547 TTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGAGCTGAGTGCAGCGGTTCCTGA 606
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TTTAAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGAGCTGAGTGCAGCGGTTCCTGA 568
Query 607 GTTTCATGCTCGGTTTTCTGCCTC-TAGCAAGGTTTATCGCTACCAGATATACAACGACA 665
||| |||||||||||||||||| | |||||||||||| |||||||| || ||||||||||
Sbjct 569 GTTCCATGCTCGGTTTTCTGCC-CATAGCAAGGTTTACCGCTACCAAATTTACAACGACA 627
Query 666 CTTTCATGGACCCGTTCCAGCGTCATTGGGC-TTACCACTGTGCTTATAAACTGAATGCT 724
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 628 CTTTCATGGACCCGTTCCAGCGTCATTGGGCATT-CCACTGTGCTTATAAACTGAATGCT 686
Query 725 TCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGCATGATTTCTCTGCATTTGCT 784
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 687 TCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAATGCATGATTTCTCTGCATTTGCT 746
Query 785 AACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTC 844
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 747 AACGCTACACGGGAAGATGGACTACCTGATCCTTTGAAAACTATATCTCGCTTCGATGTC 806
Query 845 ATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAA 904
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 807 ATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTTCAGGCTTTTTGTACAGACAA 866
Query 905 GTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATT 964
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 867 GTTAGAAACATGGTTGCTTTGTTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATT 926
Query 965 GTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTAGTTTGCCT 1024
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 927 GTCCCAATGATTCTGGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTACTTTGCCT 986
Query 1025 GCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATAAGGAAGATCATCTAAAGCTT 1084
|| |||||||||||||||||||||||||||||||||| | |||| |||| ||||||||
Sbjct 987 GCACCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTACAGGGAATCTCATTTAAAGCTT 1046
Query 1085 CCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACACTATAACAAAATGTAAACTT 1144
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1047 CCATTGGATTGTCCTGTAACTAGTTTTGGTAGACATCACACTATAACAAAATGTAAACTT 1106
Query 1145 CCCTTCTATTGAAACATTCTTCTGTTTGACATAAGAAACTGA-ACAATTAGAACATTGTC 1203
||||| ||||||| ||||||||||||| |||||||||||||| | ||||| || ||||||
Sbjct 1107 CCCTTTTATTGAATCATTCTTCTGTTTAACATAAGAAACTGATA-AATTATAATATTGTC 1165
Query 1204 TATTTA 1209
||||||
Sbjct 1166 TATTTA 1171
> Ahg951777 jgi|Araly1|951777|scaffold_15900006.1
Length=778
Score = 1014 bits (549), Expect = 0.0
Identities = 618/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 526 TTTGGATAGCTTTCACGCTGCTTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 125 TTTGGATAGCTTTCACGCTGCTTTAAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 184
Query 586 GCTGAGTGCAGCGGTTCCTGAGTTTCATGCTCGGTTTTCTGCCTCT-AGCAAGGTTTATC 644
|||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| |
Sbjct 185 GCTGAGTGCAGCGGTTCCTGAGTTCCATGCTCGGTTCTCTGCC-CAGAGCAAGGTTTACC 243
Query 645 GCTACCAGATATACAACGACACTTTCATGGACCCGTTCCAGCGTCATTGGGCTTACCACT 704
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 244 GCTACCAGATATACAATGACACTTTCATGGACCCGTTCCAGCGTTATTGGGCATACCACT 303
Query 705 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGC 764
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 304 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAACTGCAGATCTTTTTGTTGGAATGC 363
Query 765 ATGATTTCTCTGCATTTGCTAACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAA 824
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 ATGATGTCTCTGCATTTGCTAACGCTACACGGGAAGATGGAGTACCTGATCCTTTGAAAA 423
Query 825 CTATATCTCGCTTCGATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 884
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTATATCTCGCTTCTATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 483
Query 885 CTGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAG 944
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 484 CAGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGTTGATTCATATTGGAAAAG 543
Query 945 AAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTG 1004
|| | |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 544 AATCTCTGGATTCTGACATCGTCCCAATGATTCTGGAAACAAAAGACAGGAGGGTGCTTG 603
Query 1005 CAAAGTATACTAGTTTGCCTGCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 1064
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 604 CAAAGTATACTACTTTGCCTGTGCCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 663
Query 1065 AGGAAGATCATCTAAAGCTTCCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACA 1124
||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 664 AGGAAGATCATTTAAAGCTTCCATTGGATTGTCCTGTAACTAGTTTTGGTAGACATCACA 723
Query 1125 CTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTTTGACAT 1176
||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 724 CTATAACAAAATGTAAACTTCCCTTCTATTGAATCATTCTTCTGTTTAACAT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5