BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07310.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928405 jgi|Araly1|928405|scaffold_300862.1 1855 0.0
> Ahg928405 jgi|Araly1|928405|scaffold_300862.1
Length=1157
Score = 1855 bits (1004), Expect = 0.0
Identities = 1103/1150 (96%), Gaps = 10/1150 (1%)
Strand=Plus/Plus
Query 110 GCTCAAATCTGATCAATGG--A-TAGTTGTCTCTCTAATCAAACGGCGCTTCAGTTTCTC 166
|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 7 GCTC-AATCTGATCAATGGATAGTAGTTGTCTCTCTAATCAAACGGCGCTTCAGTTTCTC 65
Query 167 CCGTCGCGTTCCAGGAGACAGAGCGGCGAT---GGAGGCGGTGGTTTTGTTATTCCGGCG 223
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 66 CCGTCGCGTTCCAGGAGACAGAGCGGCGATGGGGGAGGCGGTGGTTTTGTTATTCCGGCG 125
Query 224 AAGAGGAAGATCCAGTATAGTTCGATGGTTGTGGTTGCGGCGGCGGGACAGAGTCGGTGT 283
| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 126 AGGAGGAAGATCCAGTATAGCTCGATGGTTGTGGTTGCGGCGGCGGGACCGAGTCGGTGT 185
Query 284 GAGCCTGGAAGCAGTCTAAACGCGCCGCTTGAGCCACGATCGGCGCAGGGGAGGTTTCTG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GAGCCTGGAAGCAGTCTAAACGCGCCGCTTGAGCCACGATCGGCGCAGGGGAGGTTTCTG 245
Query 344 AGAAGCGTGTTGCTAAACAAACGGCAGCTATTTCATTACGCCGCCGCTGATGAGCTAAAG 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 246 AGAAGCGTGTTGCTAAACAAACGGCAGCTATTTCATTACGCCGCCGCTGATGAGCTTAAG 305
Query 404 CAACTGGCTGATGATAGGGAAGCTGCTTTAGCTCGTATGTCTCTCAGCTCTGGTTCCGAT 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CAACTGGCTGATGATAGGGAAGCTGCTTTAGCTCGTATGTCTCTCAGCTCTGGTTCCGAT 365
Query 464 GAGGCTTCTCTCCACAGAAGGATAGCTGAACTCAAGGAACGCTACTGTAAAACTGCAGTC 523
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 366 GAGGCTTCTCTCCACAGAAGGATAGCTCAACTCAAGGAACGTTACTGCAAAACTGCAGTC 425
Query 524 CAAGACATAATGTACATGTTAATCTTTTACAAATACTCCGAGATAAGAGTCCCTCTTGTT 583
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 426 CAAGACATAATGTACATGCTAATCTTCTACAAATACTCCGAGATAAGAGTCCCGCTTGTT 485
Query 584 CCAAAGCTATCCAGATGCATCTATAATGGAAGACTCGAGATCTGGCCTTCAAAAGACTGG 643
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 486 CCAAAGCTATCTAGATGCATCTACAATGGAAGACTCGAGATCTGGCCTTCAAAAGACTGG 545
Query 644 GAGTTAGAGTCAATTTACAGCTGCGATACCCTTGAGATCATCAAAGAACACGTTAGCGCA 703
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 546 GAGTTAGAGTCAATTCACAGCTGCGATACCCTTGAGATCATCAAAGAACATGTAAGCGCA 605
Query 704 GTCATCGGATTACGGGTCAACTCATGTGTGACTGACAATTGGGCAACAACGCAGATACAG 763
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 606 GTCATCGGATTACGGGTCAATTCATGTGTGACTGACAATTGGGCAACAACCCAGATACAG 665
Query 764 AAACTGCATCTCAGGAAAGTATATGCTGCCTCGATCTTGTACGGTTACTTCTTGAAATCA 823
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 666 AAACTGCATCTCAGGAAAGTATACGCTGCCTCGATCTTGTACGGTTACTTCTTGAAATCG 725
Query 824 GCTTCCCTAAGGCACCAGCTTGAGTGTTCCTTATCAGATATTCATGGAAGCGGATATCTG 883
|||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 726 GCTTCCCTAAGGCATCAGCTTGAGTGTTCCTTTTCAGATCTCCATGGAAGCGGATATCTG 785
Query 884 AAAAGTCCCATCTTTGGATGCTCATTCACAACGGGCACTGCACAGATCTCCAACAAGCAG 943
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 786 AAAAGTCCTATCTTTGGATGCTCTTTCACAACGAGCACTGCACAGATCTCCAACAAGCAG 845
Query 944 CAGCTGAGACATTACATCTCAGACTTTGATCCCGAGACATTGCAGAGATGCGCAAAACCA 1003
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 846 CAGCTGAGACATTACATCTCAGGGTTCGATCCCGAGACATTGCAGAGATGCGCAAAACCA 905
Query 1004 AGGACAGAGGAGGCAAGGAATCTGATAGAGAAGCAAAGTTTGGCTCTTTTTGGCACGGAA 1063
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 906 AGGACAGAGGAGGCAAGGAATCTGATAGAGAAGCAAAGTTTGGCCCTTTTTGGCACGGAA 965
Query 1064 GAGAGTGATGAGACCATAGTGACATCGTTTTCGAGTCTGAAGCGGTTGGTTCTCGAGGCT 1123
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GAGAGTGATGAGACAATCGTGACATCGTTTTCGAGTCTGAAGCGGTTGGTTCTCGAGGCT 1025
Query 1124 GTGGCGTTTGGGACATTCCTGTGGGACACGGAATTGTATGTAGATGGTGCATATAAGCTG 1183
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GTGGCGTTTGGGATATTCCTGTGGGACACGGAATTGTATGTAGATGGTGCATATAAGCTT 1085
Query 1184 AAGGAGAAT---GGGAATGCAGAAGAACAAGAAGGAAAGAAAAGCATATGATGAACAAGT 1240
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1086 AAGGAGAATAATGGGAATGCAGAAGAACAAGAAGGAAAGAGAAGCATATGATGAACCAGT 1145
Query 1241 CTGGTTAGAA 1250
|||||||||
Sbjct 1146 TTGGTTAGAA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5