BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07565.4 Length=1246 Score E Sequences producing significant alignments: (Bits) Value Ahg478080 jgi|Araly1|478080|fgenesh2_kg.3__781__AT3G07565.3 1615 0.0 > Ahg478080 jgi|Araly1|478080|fgenesh2_kg.3__781__AT3G07565.3 Length=1231 Score = 1615 bits (874), Expect = 0.0 Identities = 1132/1245 (91%), Gaps = 64/1245 (5%) Strand=Plus/Plus Query 6 GAAGCAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAATCTCCCCATCAtctctctctctc 65 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 1 GAAGAAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAATCTCTCCATC-TCTCTCTC-CT- 57 Query 66 cctctctctGTTCCTATCCCGGCGAATTCATATCTGAATT-TCCCAAAATTCAAACTTTT 124 |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 58 --TCTCTCTGTTCCTATCCCGGCGAATTCATATCAGAATTGCCCCAAAATTCAAAC-TTT 114 Query 125 CCGGTGGAATTATTTTAGGAAACC-AAGTGACTTCTTAAGCTCCAAAAATTGGGTATTTA 183 |||||| ||||||||||||||||| ||||| ||| || ||||| ||||||||||||||| Sbjct 115 CCGGTGAAATTATTTTAGGAAACCAAAGTGGCTT-TTTAGCTCGAAAAATTGGGTATTTG 173 Query 184 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCGTCGGCGACGCAGAAG 243 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 174 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCTTCGGCTACACAGAAG 233 Query 244 GTATCGTCTTCTTCAGCGGCGGCGGCGAATGGCGCTGCTGTGAATTCCGTCGATAATGGT 303 ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | Sbjct 234 GTATCGTCTTCTTCAGCGGCGGCTACGAATGGCGCAGCTGTGAATTCGGTCGATAA---T 290 Query 304 GGAAATACAGGCGCGGCGGCGGATAATTCACAGACGATTGGCGCGTTGAGGCATAATCCA 363 || | ||| || | ||| || |||||||||||||||||||||| Sbjct 291 GG---T-----------GGC----AA--CGCAGGCG-TTGGCGCGTTGAGGCATAATCCT 329 Query 364 GGGATCTCTACCGATTGGACTCTTGAGGAACAATCTCTATTGGAAGATTTGCTTGTCAAG 423 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 330 GGGATCTCTACCGATTGGACTCATGAGGAACAATCTCTATTGGAAGATTTACTTGTCAAG 389 Query 424 TACGCGACAGAACCGTCGGTTTTTCGATATGCGAAGATTGCTATGAAAATGAAAGATAAG 483 |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 390 TACGCGACCGAACCTTCGGTTTTTCGATATGCGAAGATTGCGATGAAAATGAAGGATAAG 449 Query 484 ACTGTTCGAGATGTTGCCCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 543 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 450 ACTGTTCGAGATGTTGCGCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 509 Query 544 AGGAAAGAAGATCATTCCTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAT 603 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 510 AGGAAAGAAGACCATTCGTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAG 569 Query 604 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTTCATCCTAATGGTCCTTCTTATGCTCCG 663 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 570 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTGCATCCTAATGGTCCTTCTTATGCTCCA 629 Query 664 CCTATGATGCCTATCGATACTGATGATGGTATTTCATATAAAGCTATTGGTGGTGTGAGT 723 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 630 CCTATGATGCCTATCGATACTGATGATGGTATTTCGTATAAAGCTATTGGTGGTGTGAGT 689 Query 724 GGAGATCTTCTCGAGCAAAATGCTCAAATGTTCAATCAACTTTCAACAAATTTCTCAGCT 783 |||||||||||||||||||||||||||||| | |||| | | || || ||| Sbjct 690 GGAGATCTTCTCGAGCAAAATGCTCAAATG-T---TCAA---T---C-AAGTT-TCA--- 734 Query 784 TTCCAGGTGAATTCAACTTCCA-CTTTTCATCTTCTACATGAGAATGTCAATATCTTGTG 842 | || |||| | | || | |||| | |||||||||||||||||||||||||| Sbjct 735 -T-CA----AATT--TC-T-CAGC-TTTC--CAGCTACATGAGAATGTCAATATCTTGTG 781 Query 843 CAAAGCTCGAGACAATATCCTTGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 902 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 782 CAAAGCTCGGGACAATATCCTCGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 841 Query 903 GAAGCAGATGCCACCTCTTCCGGTGAAGTTGAATGAGGAGCTGGCAAATTCGATCCTCCC 962 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct 842 GAAGCAGATGCCACCTCTTCCGGTGAAGGTGAATGAGGAGCTGGCAAACTCGATTCTCCC 901 Query 963 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGGCGATAGATGGTTGGTTCTGACCAAGG 1022 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 902 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGTCGACCTATGGTTGGTTCTGACCAAGG 961 Query 1023 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1021 Query 1083 CACTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1142 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CAGTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1081 Query 1143 TTACAATTTCCGTCAGTCTCTGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1202 | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1082 T-ACAATTTCTGTCAGTCTATGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1140 Query 1203 TCGCGTATCGTT-GTTTAGGATGTGAATAGATTTCAATTGGTATG 1246 |||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1141 TCGCATATCGTTTGTTTAGGATGTGAATAGATTTCAATTGGTATG 1185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46548081657 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5