BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G07640.1 Length=987 Score E Sequences producing significant alignments: (Bits) Value Ahg478093 jgi|Araly1|478093|fgenesh2_kg.3__794__AT3G07640.1 1131 0.0 > Ahg478093 jgi|Araly1|478093|fgenesh2_kg.3__794__AT3G07640.1 Length=810 Score = 1131 bits (612), Expect = 0.0 Identities = 750/815 (92%), Gaps = 15/815 (2%) Strand=Plus/Plus Query 40 ATGAAAGTAGCGGAGAAGATTGTTTTCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 99 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAAGTAGCGGAGAAGATTGTTATCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 60 Query 100 ATTTCTGATACTTTAAACCCTAGCCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 159 ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTGCTGATGCTTTAAACCCTAACCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 120 Query 160 CAGCTTCCGTTGGATAAGTATGGCGTTGAAGGTGTGGAAACCGGCGGGAGTATCGTTCAT 219 || |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| Sbjct 121 CACCTTCCGTTGGATAAGTATGGTGTCGAAGGTGCGGAAACCGGCGGGAGTATCGTTCAT 180 Query 220 TTCGTAGATGAAAATGAAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGTTATGAGCCT 279 ||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 TTCGTCGATGAGAATGGAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGCTATGAGCCT 240 Query 280 CCAGTACTAGTGTGTGCTATGAATGAACTGCTGGACCTAATTACAAGGGGATCGTCAA-C 338 ||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||| | Sbjct 241 CCACTACTAGTGTGTGCTATGAATGAACTGCTGGACCGAATTACAAGGGAAGCGTCAAGC 300 Query 339 TCTACCCACAATCATAGCTCC-TTTCTTTGTGGCGGCATCTAAGCTCAAGTTCAATAACA 397 ||||||||||| ||||||| |||| |||||||| |||||||||| ||||||||||||| Sbjct 301 -CTACCCACAATTGTAGCTCCTTTTC-TTGTGGCGTCATCTAAGCTTAAGTTCAATAACA 358 Query 398 GATCCCT-GGAAGCAAATAACAGAAAAGCTAGTCTTCATTACGTTCAAGTTGCTACAGAA 456 ||| ||| |||||||||| ||||| |||||||||||| ||||||||||||| ||||| Sbjct 359 GAT-CCTATGAAGCAAATAGCAGAACAGCTAGTCTTCACTACGTTCAAGTTGGGCCAGAA 417 Query 457 ACAGAGACCAGTAGGTTATTTGCTTCTCGCATCGAGAAACCACCACTATCGATGCAGATC 516 ||||||| ||||||| |||||||||||||||||||||||||||| | || |||||||||| Sbjct 418 ACAGAGATCAGTAGGCTATTTGCTTCTCGCATCGAGAAACCACCGCCATTGATGCAGATC 477 Query 517 CATTATGAACCTTTGTCATGCTTGCTTCATCTAGCTCGTGTTAAACGCCTGCCTACCGCT 576 |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || Sbjct 478 CATTATGAACCTTTGTCATGCTTGCTCCACCTAGCTCGTGTTAAACGCCTGCCTACCTCT 537 Query 577 ATTCTCATAGGCCAAAGAAGCAATAGCCTAACTCATAAAGCTCTAGA-CGAAGAGCTTCA 635 |||||||| || |||||||| | ||||||| |||||||||||||||| | |||| ||||| Sbjct 538 ATTCTCATTGGGCAAAGAAGTAGTAGCCTATCTCATAAAGCTCTAGATC-AAGACCTTCA 596 Query 636 GGTGATCCATGAAACAGGGGAGC-TCGTGGCTAGTTGGACAGGACTGTCTTTCTCAAGAG 694 |||||| |||||||||||||||| || |||| |||||||| ||||||||||||||||||| Sbjct 597 GGTGATACATGAAACAGGGGAGCTTC-TGGCCAGTTGGACCGGACTGTCTTTCTCAAGAG 655 Query 695 ACAGAATCAAGTGGAGCGCATCAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 754 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 656 ACAGAATCAAGTGGAGCGCAAAAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 715 Query 755 TTTATGGCTAATCTTCACAGGTCAGGTC---T-TTTT-CATGGCCCAACACTGCTACAGT 809 ||||||| |||||||||||||||||||| | |||| ||||||| |||||||||||||| Sbjct 716 TTTATGGTTAATCTTCACAGGTCAGGTCAGGTCTTTTTCATGGCCTAACACTGCTACAGT 775 Query 810 CTTTGCTTGGACCTGCAGTAAATTTCCCTATTGTA 844 ||||||||||||||||| ||||||||||| ||||| Sbjct 776 CTTTGCTTGGACCTGCACTAAATTTCCCTGTTGTA 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36674246154 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5