BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07650.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3 2002 0.0
> Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3
Length=1703
Score = 2002 bits (1084), Expect = 0.0
Identities = 1343/1462 (92%), Gaps = 42/1462 (3%)
Strand=Plus/Plus
Query 42 agaagaagaagaagaagaagaagaagaagTTCTGGAATAGTCATCATCTTCTCTGTTTCT 101
||||| | ||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1 AGAAGCACAAGAAGAAGAAGAAGAAGAAGTTCTGGAATA---ATTATCGTCTCTGTTTCT 57
Query 102 AGGCTTTGTTTATTTGTCTCTAAAGTTTCTGGATTCAACTTCTGAAGAAGATAGTAGTAG 161
||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 58 AGGGTTTGTTTATTTCTCTCTAAAGTTTCTGGATTCAACTTCTGAAGAAGATCTTTTTA- 116
Query 162 TCCACAAGAAGGATCTT---CTTTACAAAGTTGATTTGGTCAGAGCCAAGGAAGATGGGT 218
| | || | || | | |||||| |||||||||||| |||||||||||||
Sbjct 117 T--TTATTAACTTTTTTGGACAGCAGAAAGTTTATTTGGTCAGAGTGAAGGAAGATGGGT 174
Query 219 TACATGTGTGACTTCTGTGGTGAACAAAGATCTATGGTGTACTGTCGATCCGATGCAGCT 278
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TACATGTGTGACTTCTGTAGTGAACAAAGATCTATGGTGTACTGTCGATCCGATGCAGCT 234
Query 279 TGTTTGTGTCTCTCCTGTGACCGGAGTGTTCATTCCGCTAATGCATTGTCCAAACGACAT 338
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 235 TGTCTGTGTCTCTCCTGTGACCGGAGTGTTCATTCTGCTAATGCATTGTCCAAACGACAT 294
Query 339 TCTCGGACACTTGTCTGCGAGAGATGCAATGCTCAGCCTGCTACTGTCAGGTGTGTTGAA 398
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 295 TCTCGGACACTTGTCTGCGAGAGATGCAATGCTCAGCCTGCTACAGTCAGATGTGTTGAA 354
Query 399 GAAAGGGTTTCACTCTGTCAAAACTGTGACTGGTCTGGCCacaacaacagcaacaacaac 458
|||||||| ||||||||||||||||||||||||||||| | | ||||||||
Sbjct 355 GAAAGGGTCTCACTCTGTCAAAACTGTGACTGGTCTGG---------C--C-ACAACAAC 402
Query 459 aaTTCTTCGTCTTCTTCTACTTCGCCGCAGCAGCATAAGAGGCAAACCATAAGTTGCTAT 518
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AATTCTTCTTCTTCTTCTACTTCGCCGCAGCAGCATAAGAGGCAAACCATAAGTTGCTAT 462
Query 519 TCGGGTTGCCCTTCCAGCTCAGAACTCGCTTCCATTTGGTCTTTCTGTTTGGACTTAGCT 578
|||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 463 TCGGGTTGCCCTTCGAGCTCAGAACTAGCCTCCATTTGGTCCTTCTGTTTGGACTTAGCC 522
Query 579 GGACAATCTATTTGTGAACAAGAACTGGGTATGATGAATATAGACGATGATGGTCCTACC 638
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 523 GGACAATCCATTTGTGAACAAGAAATGGGTATGATGAATATAGACGATGATGGTCCTACC 582
Query 639 GACAAGAAAACTTGTAATGAGGATAAGAAAGATGTCTTGGTTGGATCCTCTTCAATTCCT 698
||||| |||| ||||||||||||||||||||||||| | || | | ||||||||||
Sbjct 583 GACAACAAAAATTGTAATGAGGATAAGAAAGATGTC-T--TT-G----T-TTCAATTCCT 633
Query 699 GAAACCAGTTCTGTACCACAAGGAAAATCATCTTCTGCTAAGGATGTTGGAATGTGTGAA 758
||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 634 GAAACCAGTTCTGCAGCACAAGGAAAGTCATCTTCTGCTAAGGATGTTGGAGTCTGTGAA 693
Query 759 GATGACTTCTACGGGAACCTTGGTATGGATGAAGTTGACATGGCACTTGAGAACTATGAA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GATGACTTCTACGGGAACCTTGGTATGGATGAAGTTGACATGGCACTTGAGAACTATGAA 753
Query 819 GAACTCTTTGGTACCGCCTTTAACCCCTCTGAAGAGCTATTCGGGCATGGTGGAATCGAT 878
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 754 GAGCTCTTTGGTACCGCCTTTAACCCCTCGGAAGAGCTATTTGGGCATGGTGGAATCGAT 813
Query 879 AGCCTTTTCCATAAGCACCAAACA---GCTCCAGAGGGAGGGAATTCGGTGCAGCCAGCA 935
|| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 814 AGTCTTTTCCAGAAGCACCAAACAAAAGCTCCAGAGGGAGGGAATTCGGTGCATCCAGCT 873
Query 936 GGCAGTAATGATTCGTTCATGAGTTCGAAAACTGAGCCAATAATTTGCTTCGCATCGAAG 995
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 874 GGCAGTAATGATTCGTTCATGAGTTCGAAAACTGAGCCAATAATTTGCTACACATCGAAG 933
Query 996 CCAGCACATTCGAACATATCCTTCTCTGGAGTCACTGGAGAAAGTAGTGCTGGAGATTTC 1055
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 934 CCAGCACATTCGAACATATCGTTCTCTGGAGTCACTGGAGAAAGTAGTGCTGGAGATTTC 993
Query 1056 CAAGAATGTGGTGCATCATCTTCCATACAGCTCTCGGGGGAGCCACCATGGTATCCTCCA 1115
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 994 CAAGAATGTGGTGCATCATCTTCGATACAGCTCTCGGGCGAGCCACCATGGTATCCTCCA 1053
Query 1116 ACAT-TACAGGATAACAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCG 1174
|||| | || || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ACATCT-CAAGAAAATAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCG 1112
Query 1175 TTACAAGGAGAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATGCTTCCCGCAA 1234
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1113 ATACAAGGAAAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATGCTTCTCGCAA 1172
Query 1235 AGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGCGATTTGTCAAAGCTGGTGAAGCTTA 1294
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1173 AGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGAGATTTGTCAAAGCTGGTGAAGCTTA 1232
Query 1295 TGATTACGACCCTCTCACCCCAACCAGAAGTTATTGAAGACTCCTT-TTGAAAGGTACAT 1353
|||||||||||| ||||||||||||||||| |||||| || || | |||||||||| |
Sbjct 1233 TGATTACGACCCCCTCACCCCAACCAGAAGCTATTGAGGAGTC-TAATTGAAAGGTAAAA 1291
Query 1354 AGA---TATATATACATGGCGAAGAATCGAACAAGAAAGGTTTT-GACTTATGGGCAGTT 1409
| | || ||| ||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1292 AAAAGGTAGATACACATGGCGAAGAATCGAACAAGAAAGGTTTTTGACTTATGGGTAGTT 1351
Query 1410 TCAAGTGAGCAACTTGGAAAATTGTGGGTTAGTAACAAAACAAGACTACTGTAGCATGAA 1469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1352 TCAAGTGAGCAACTTGGAAAATTGTGGGTTAGTAACAAAACAAGACTACTCTAGCATGAA 1411
Query 1470 CAGATTTCAAGACTGACTCTTG 1491
|||||| |||||||||||||||
Sbjct 1412 CAGATT-CAAGACTGACTCTTG 1432
Score = 248 bits (134), Expect = 1e-64
Identities = 178/196 (91%), Gaps = 15/196 (8%)
Strand=Plus/Plus
Query 1616 GCGTCTCACACTGATCAGGGTTCCATGAATTTTGTTCTTCTCTTGGTAGTTAAAAAGGCA 1675
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1432 GCGTCT--CACTGATCAGGGTTCCATGAATTTTGTTCTTCTC-T-GTAGTTAAAAAGGCA 1487
Query 1676 GGGAAGGAGATTTAGAGTAATTTAAACAATATGTGATTGTTGTATATGCCTTTGTATTTG 1735
| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 1488 --G--GGAGATTTAGAGTAA-TTAAACAATATGTGATTGTTGTGTATGCCTTTCTATTTG 1542
Query 1736 TTTGT---ATACTCATAAATG-TTTTT-CTGTTTTGTACTCGG-CATTCTTGTAAATTAA 1789
||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1543 TTTGTTGTATACTCATAAATGCTTTTTTCTGTTTTGTACTCGGGCATTCTTGTAAATTAA 1602
Query 1790 AGACATTATCCACATT 1805
| ||||||||||||||
Sbjct 1603 AAACATTATCCACATT 1618
Score = 115 bits (62), Expect = 1e-24
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1874 ACTAGTTCAAGTTTAACGAGATTTTGGTTTGTAGTAACTTCAAGAGGTTGATCCAACAAT 1933
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1630 ACTAGTTCAAGTTTAAGGAGATTTTGGTTTGTAGCAACTTCAAGAGGTTGATCCAACAAT 1689
Query 1934 GAGGCAATGCAAAA 1947
||| |||||| |||
Sbjct 1690 GAGACAATGCCAAA 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5