BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07670.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928451 jgi|Araly1|928451|scaffold_300908.1 2510 0.0
> Ahg928451 jgi|Araly1|928451|scaffold_300908.1
Length=1556
Score = 2510 bits (1359), Expect = 0.0
Identities = 1481/1542 (96%), Gaps = 0/1542 (0%)
Strand=Plus/Plus
Query 31 TTTCTCTTTTCCGATGGCAAAAGCTTGCCTCTTGCAGTCTACTCTACTCCCAGCTTACTC 90
|||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 9 TTTCTCCTTTCCAATGGCAAAAGCTTGTGTCTTGCAGTCTACTCTCCTCCCAGCTTACTC 68
Query 91 TCCACTTCACAAACTTCGTAATCAAAACATCACCCTCTCTTTCTCACCGCTTCCGCTGTC 150
||| |||||||| || |||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 69 TCCGCTTCACAAGCTCCGTAATCAAAACTTCACCATCTCTTTCCCACCGCTTCCGGTGTC 128
Query 151 CCGATGCCGTCCCGGAATCCACTGCTCAGTTTCGGCCGGTGAGACTACAATACAATCCAT 210
||||||||||||||||||||||||||||||||||||||||||||| || | || |||| |
Sbjct 129 CCGATGCCGTCCCGGAATCCACTGCTCAGTTTCGGCCGGTGAGACCACGACACGATCCGT 188
Query 211 GGAGGAAGCTCCGAAGATATCATGGGGATGCGAGATTGATTCACTTGAGAACGCTACTTC 270
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 189 GGAGGAAGCTCCGGAGATATCATGGGGCTGCGAGATAGATTCACTTGAGAACGCTACTTC 248
Query 271 TCTTCAGAACTGGCTCTCTGATTCAGGTCTCCCTCCGCAGAAAATGGCTATTGATAGAGT 330
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 249 TCTTCAGAACTGGCTCTCTGATTCAGGTCTTCCTCCGCAGAAAATGGCCATTGATAGAGT 308
Query 331 CGACATCGGTGAGCGAGGCCTCGTCGCTTCACAGAATCTCAGAAAAGGAGAGAAATTGCT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGACATCGGTGAGCGAGGCCTCGTCGCTTCACAGAATCTCAGAAAAGGAGAGAAATTGCT 368
Query 391 CTTCGTTCCTCCTTCTCTCGTCATCAGTGCTGATTCCGAATGGACCAACGCAGAAGCTGG 450
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 369 CTTCGTTCCTCCTTCTCTCGTCATCAGTGCCGATTCCGAATGGACCAACCCAGAAGCTGG 428
Query 451 TGAAGTGATGAAACGTTATGATGTTCCAGATTGGCCTTTGCTCGCCACTTATCTTATAAG 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGAAGTGATGAAACGTTATGATGTTCCAGATTGGCCTTTGCTCGCCACTTATCTTATAAG 488
Query 511 TGAAGCAAGTCTTCAGAAAAGCTCAAGATGGTTTAACTATATCTCAGCTCTTCCCCGACA 570
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 489 TGAAGCAAGTCTTCAGAAAAGTTCAAGATGGTTTAACTACATCTCTGCTCTTCCACGACA 548
Query 571 ACCTTACTCGCTTTTATACTGGACTCGGACAGAGCTTGATATGTACTTGGAAGCTTCTCA 630
||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 549 ACCTTACTCACTTTTGTACTGGACTCGGGCAGAGCTTGATATGTATTTGGAAGCTTCGCA 608
Query 631 GATTCGAGAACGGGCAATTGAAAGAATCACCAATGTTGTTGGAACTTATGAAGATCTAAG 690
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 609 GATTCGAGAACGGGCGATTGAAAGAATCACGAATGTTGTTGGAACTTATGAAGATCTAAG 668
Query 691 AAGCAGGATATTTTCCAAACACCCTCAACTTTTCCCTAAAGAGGTTTTCAATGATGAGAC 750
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 AAGCAGGATATTTTCCAAACACCCTCACCTTTTCCCTAAAGAGGTTTTCAATGATGAGAC 728
Query 751 ATTTAAGTGGTCTTTTGGAATCCTATTCTCACGGTTGGTGCGGTTGCCTTCTATGGATGG 810
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 729 ATTTAAGTGGTCTTTTGGAATCCTATTCTCACGGTTGGTACGGTTGCCGTCTATGGATGG 788
Query 811 AAGATTTGCCTTAGTTCCATGGGCAGATATGCTTAATCATAATTGTGAGGTTGAGACGTT 870
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AAGATTTGCCTTAGTTCCTTGGGCAGATATGCTTAATCATAATTGTGAGGTTGAGACGTT 848
Query 871 CCTGGATTATGATAAATCTTCAAAAGGAGTTGTCTTTACAACAGATCGACCATATCAACC 930
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CCTGGATTATGATAAGTCTTCAAAAGGAGTTGTCTTTACAACAGATCGACCATATCAACC 908
Query 931 AGGTGAGCAGGTTTTCATATCCTATGGGAATAAATCTAACGGAGAGCTATTGTTATCTTA 990
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 909 AGGTGAGCAGGTTTTCATATCGTATGGGAATAAATCTAACGGAGAGCTATTATTATCTTA 968
Query 991 TGGGTTTGTTCCCAGAGAAGGAACCAATCCTAGTGATTCAGTAGAACTAGCATTATCACT 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 969 TGGGTTTGTTCCCAGAGAAGGAACCAATCCTAGTGATTCAGTAGAACTAGCATTGTCACT 1028
Query 1051 TAGGAAAAACGATAAGTGTTACGAGGAAAAGCTGGATGCTTTAAAGAAACACGGATTATC 1110
||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1029 GAGGAAAAACGATAAGTGTTACAAAGAAAAGCTGTATGCTTTAAAGAAACACGGATTATC 1088
Query 1111 GACACCTCAATGCTTTCCCGTAAGGATAACGGGTTGGCCAATGGAGCTAATGGCATATGC 1170
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 CACACCTCAATGCTTCCCCGTAAGGATAACAGGTTGGCCAATGGAGCTAATGGCATATGC 1148
Query 1171 TTATCTTGTGGTGAGCCCTCCAGATATGAGAAACAACTTTGAAGAGATGGCGAAAGCTGC 1230
|||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1149 TTATCTAGTGGTGAGCTCGCCAGATATGGGAAACAACTTTGAAGAGATGGCGAAAGCTGC 1208
Query 1231 TTCAAATAAGACATCAACAAAGAATGATCTAAAATATCCTGAAATCGAGGAAGACGCATT 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1209 TTCAAATAAGACATCAACAAAGAATGATCTAAAATATCCTGAAATCGAGGAAGATGCATT 1268
Query 1291 GCAGTTCATACTGGACTCATGCGAAACAAGCATATCAAAGTACAGCCGATTTCTAAAGGA 1350
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1269 GCAGTTCATACTGGACTCATGTGAAACAAGCATATCAAAGTACAGCCGATTTTTAAAGGA 1328
Query 1351 AAGTGGATCAATGGATTTGGACATAACATCTCCAAAACAGTTGAACCGAAAAGCGTTTCT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAGTGGATCAATGGATTTGGACATAACATCTCCAAAACAGTTGAACCGAAAAGCGTTTCT 1388
Query 1411 GAAACAGCTAGCTGTAGACTTGTCCACTAGTGAGCGCAGGATACTGTACCGTGCTCAATA 1470
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1389 GAAACAGCTAGCTGTAGACTTGTCCACTAGCGAGCGCAGGATACTGTACCGTGCCCAATA 1448
Query 1471 CATTCTGAGGAGGAGACTGAGAGATATCAGAAGTGGTGAGCTGAAGGCTCTACGGCTCTT 1530
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1449 CATTCTGAGGAGGAGACTGAGAGATATTAGAAGTGGTGAGCTGAAGGCTCTACGGCTCTT 1508
Query 1531 CAGTGGACTTAGGAACTTCTTCAAGTGAATGTTGAATGAGGA 1572
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 1509 CAGTGGACTTAGGAACTTCTTCAAGTGAGTGTTGAATGAGGA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5