BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G07700.3
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478103 jgi|Araly1|478103|fgenesh2_kg.3__804__AT3G07700.1 2798 0.0
> Ahg478103 jgi|Araly1|478103|fgenesh2_kg.3__804__AT3G07700.1
Length=2482
Score = 2798 bits (1515), Expect = 0.0
Identities = 1663/1733 (96%), Gaps = 15/1733 (1%)
Strand=Plus/Plus
Query 128 AAGGACGACACCATTACGCAACTTAGTCCTCTTACctctctctctctcGACTCTGTTCCA 187
||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 1 AAGGACGACACCATTACGCAACTTAGTCCTCTT---TCTCTCTCTGTGGACTCTGTTCCA 57
Query 188 AGAAATTCCTCTACTTAAT-ACAGCTGATTCTACAGATTCCTGCTACGAAATTTCTGGGT 246
||||| || |||||||||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 58 AGAAAATCATCTACTTAATAATAGCTGATTTTACAGATTCCTGCAACGAAATTTCTGGGT 117
Query 247 CTGGGTTGATCTTTGTCTCACCAGTCAACCCAATTCAGGACTTTGATAAAGGTGGAAATG 306
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 118 CTGGGTTGATCTCTGTCTCACCAGTCAACCCAATTCAGGACTCTAATAAAGGTGGAAATG 177
Query 307 GCGGCTTTATTAGCTTCTCAGAGCTGCTGCTATGGCGGTGAGACCGCAAGAGTCACCAAA 366
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 178 GCGGCGTTATTAGCTTCTCAGAGCTGCTGCTATGGTGGTGAGACCGCAAGAATCACCAAA 237
Query 367 GCTATTGGTTTCAGTAGCTCTTTGGAGAATCATTTCACTGGGGAAGCCACTCAGTGTTAT 426
||||||||||||||| ||||| | ||||| | ||||||||||||||| ||||||||||||
Sbjct 238 GCTATTGGTTTCAGTGGCTCTGTAGAGAACCCTTTCACTGGGGAAGCTACTCAGTGTTAT 297
Query 427 GGCAGCAAGTCTAAGAGATTTCGTATTGAGATGAGACAGTCGGAATTGCCCTCTAAGGTT 486
||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 298 GGCAGCAAGTCCAAGAGATTTCGTATTGAGATGAGACAGTCGGAACCCCCCTCAAAGGTT 357
Query 487 GGAATCAATGGACGTTCAGTCAAAATGGTTCCTGCGAGTGAGGTGGTGAAGAGGAAAGAT 546
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 358 GGAATCAATGGACGTTCAGTCAAAATGGTTCCTGCGACTGAGGTGGTGAAAAGGAAAGAT 417
Query 547 -G-GTG-----TG--AATGGATCGGCTGG-GAAAGGTGTTAATGGAGCGAGTTTGGTTAG 596
| ||| || |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 418 GGTGTGAATAATGTAAATGGATCAGC-GGTGAAAGGTGTTAATGGAGCGAGTTTGGTTAG 476
Query 597 TAGTAGAAACATTAATGGTGCGGCGTCAACTTTGGTTAAGGCACCAAAGAAAACAACAGA 656
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 TAGTAGAAACATTAATGGTGCGCCGTCAACTTTGGTTAAGGCACCAAAGAAAACAACAGG 536
Query 657 ATCGTACCTTCCTCCACCGGTTGAAGGAGTTAGGGTTCTTCCTTCTGATGAAGGTTTTAG 716
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 537 ATCTTACCTTCCTCCACCGGTTGAAGGAGTTAGGGTTCTTCCTTCTGATGAAGGATTTAG 596
Query 717 CTGGGCTGATGAGAATTATAGCTCACTTCAACGCAGTATTGATGTTTGGTCATTTGTTAT 776
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 597 CTGGGCTGATGAGAATTACAGCTCACTTCAACGGAGTATTGATGTTTGGTCGTTTGTTAT 656
Query 777 TTCCCTGAGGATTCGTATCTTGTTCGATAATTCGAAATGGGCTTATGTTGGAGGATTCAC 836
|||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 657 TTCCCTGAGGATTCGTGTCTTGTTCGACAATGCAAAATGGGCTTATGTTGGAGGATTCAC 716
Query 837 AGAAGAAAAACAGAAAAGCAGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATT 896
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGAAGAAAAACAGAAAAGCCGAAGAAGAGAAACAGCTTCATGGTTGAGAGAGAGTGTATT 776
Query 897 GCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCAGACTTGTT 956
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 GCAGCTTGGTCCAACGTTTATCAAACTGGGACAGTTGTCTTCAACTAGGTCGGACTTGTT 836
Query 957 TCCGCGCGAATTCGTGGATGAGCTTTCCAAGTTGCAGGACAGAGTCCCCGCTTTTTCTCC 1016
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 837 TCCACGCGAATTCGTGGATGAGCTTTCCAAATTGCAGGACAGAGTCCCGGCTTTTTCTCC 896
Query 1017 AGAGAAAGCAAAGCGCTTCATTGAGGCTGAACTTGGGGCTCCTATTAGTGTAATGTATAA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 897 AGAGAAAGCAAAGCGCTTCATTGAGGCTGAACTTGGGGCTCCTATTAGTGTAATGTTTAA 956
Query 1077 AGAATTTGAAGAGCAACCCATAGCTGCAGCTAGCCTTGGTCAGGTACACAGAGCTGTTTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 957 AGAATTTGAAGAGCAACCCATAGCTGCAGCTAGCCTTGGTCAGGTACACAGAGCTGTGTT 1016
Query 1137 GCACAATGGCGAGAAAGTGGTAGTAAAAGTACAAAGACCCGGACTAAAGAAACTTTTCGA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCACAATGGCGAGAAAGTGGTAGTAAAAGTACAAAGACCCGGACTAAAGAAACTTTTCGA 1076
Query 1197 TATTGATCTACGAAATCTGAAGCTGATTGCCGAGTATTTCCAGAAAAGTGAATCATTTGG 1256
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TATCGATTTACGAAATCTGAAGCTGATTGCCGAGTATTTCCAGAAAAGTGAATCATTTGG 1136
Query 1257 TACAAACGATTGGGTTGGTATCTATGAAGAATGTGCCTTAATTTTGTATCAAGAGATTGA 1316
||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1137 TACAAACGATTGGGTTGGTATTTATGAAGAATGTGCCTCAATTTTGTATAAAGAGATTGA 1196
Query 1317 CTACATAAACGAAGCTAAGAACGCTGACAGATTCCGGAGAGACTTCCGGAATATAAACTG 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTACATAAACGAAGCTAAGAACGCTGACAGATTCCGGAGAGACTTCCGGAATATAAACTG 1256
Query 1377 GGTCCGCGTACCTTTGGTTTATTGGGATTACTCTGCCATGAAGGTCTTGACTTTGGAGTA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTCCGCGTACCTTTGGTTTATTGGGATTACTCTGCCATGAAGGTCTTGACTTTGGAGTA 1316
Query 1437 TGTACCAGGTGTTAAGATCAACAACTTGGACGCCTTAGCTGCACGGGGTTTTAACCGTTC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTACCAGGTGTTAAGATCAACAACTTGGACGCCTTAGCTGCACGGGGTTTTAACCGTTC 1376
Query 1497 TAGAATCGCATCACGGGCCATTGAAGCTTATCTTATACAGATACTCAAAACCGGCTTCTT 1556
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1377 TAGAATCGCATCACGGGCCATTGAAGCTTATCTTATCCAGATACTCAAAACCGGCTTCTT 1436
Query 1557 TCATGCGGATCCGCACCCAGGAAACCTTGCAATTGATGTAGATGAATCAATCATCTACTA 1616
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1437 TCATGCGGATCCGCACCCAGGAAACCTTGCAATTGATGTAGATGAATCGATCATCTACTA 1496
Query 1617 TGACTTCGGCATGATGGGAGAGATCAAAACATTTACTCGGAAGAGATTACTTGATCTCTT 1676
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1497 TGACTTTGGCATGATGGGAGAGATCAAAACATTTACTCGGAAGAGATTGCTTGATCTCTT 1556
Query 1677 CTATTCTGTTTATGAAAAAGATGCAAAAAAGGTCATGCAAAACCTTATAGACCTTGAAGC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTATTCTGTTTATGAAAAAGATGCAAAAAAGGTCATGCAAAACCTTATAGACCTTGAAGC 1616
Query 1737 ACTTCAACCCACTGGAGATCTTTCATCGGTAAGGAGATCTGTTCAGTTTTTCTTGGACAA 1796
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1617 ACTTCAACCCACTGGAGATCTTTCTTCGGTAAGGAGATCTGTTCAGTTTTTCTTGGACAA 1676
Query 1797 CCTATTAAGCCAATCACCAGATCAGCAACAGACTTTGGCAGCTATTGGAGAGG 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCTATTAAGCCAATCACCAGATCAGCAACAGACTTTGGCAGCTATTGGAGAGG 1729
Score = 1088 bits (589), Expect = 0.0
Identities = 709/762 (93%), Gaps = 27/762 (4%)
Strand=Plus/Plus
Query 1934 AGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCATCAACTTTCACCTTTG 1993
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1727 AGGATCTGTTTGCAATTTCCCAGGATCAGCCATTCCGTTTCCCGTCAACTTTCACCTTTG 1786
Query 1994 TCATCCGAGCATTTTCCACACTTGAGGGTATTGGTTACATCCTTGATCCAGAATTTTCCT 2053
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1787 TCATCAGAGCATTTTCCACACTTGAGGGTATTGGTTACATCCTTGATCCAGATTTTTCCT 1846
Query 2054 TTGTGAAGGTTGCGGCTCCTTATGCGCAGGAACTCCTGGATCTAAAACAAAGGCAACGCT 2113
||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 1847 TTGTGAAGGTTGCTGCTCCTTATGCACAGGAACTCCTGGATTTAAAACAAAGGCAGCGCT 1906
Query 2114 CGGGAACTCAGCTTGTCCAAGAAATAAGAAAGCAGGCTGATGATGCCAGGTCTTCTACTC 2173
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1907 CGGGTACTCAGCTTGTCCAAGAAATAAGGAAGCAGGCTGACGATGCCAGGTCTTCTACTC 1966
Query 2174 TGTCTATGCCATATCGAGTGCAGCGAATAGAAGAGTTTGTGAAAGAACTCGATTCAGGCG 2233
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TGTCGATGCCATATCGAGTGCAGCGAATAGAAGAGTTTGTGAAAGAACTCGATTCAGGCG 2026
Query 2234 ATCTGAAACTCCGTGTTCGGGTTCTTGAGTCGGAAAGAGCAGCCCGGAAAGCGACAATAC 2293
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2027 ATCTAAAACTCCGTGTTCGGGTTCTTGAGTCGGAAAGAGCAGCCCGGAAAGCGACAATTC 2086
Query 2294 TGCAGATGGCGACGATGTATACAGTTCTTGGAGGAACTCTACTTAATATTGGGGTTACAT 2353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 TGCAGATGGCGACAATGTATACAGTTCTTGGAGGAACTCTACTTAATATTGGGGTTACAT 2146
Query 2354 TTAGCAACCAAGGAAGTCAGCTTGTTGCCAATGGATCCTTCATTGGAGCAGGGATATTCA 2413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TTAGCAACCAAGGAAGTCAGCTTGTTGCCAATGGATCCTTCATTGGAGCAGGGATATTCA 2206
Query 2414 TGTTATTGGTACTGAGGTCTATGCAAAGGGTAAATAAGCTTGATAAATTTGAGAAGATGA 2473
|| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2207 TGGCATTGGTACTGAGGTCTATGCAAAGAGTAAATAAGCTTGATAAGTTTGAGAAGATGA 2266
Query 2474 TATGATGATGACTGGTGGTCTGGTGGATAGTTTATTCTTTTAAAGCTCCAAATATCAGAT 2533
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2267 TATGATGATGACTGGTGG--------ATAGTTTATTCTTTTGAAGCTCCAAATATCAGAT 2318
Query 2534 ATAGAATT-TG-TG-AT-G---TATAGGTATAGCATGTATCTTT-AGCTCCCATA--CAC 2583
|||||||| || || || | ||||| |||||||||||||||| |||||||| | ||
Sbjct 2319 ATAGAATTGTGATGTATAGCCGTATAGATATAGCATGTATCTTTTAGCTCCCAGATTCAT 2378
Query 2584 AATATTTATAAATTGTATAAAAAC--TGTT-T-CT-AAGGA-AA--GGAAAGTCAAAGAT 2635
|||||||||||||||||||||||| |||| | || || | || |||| |||||||||
Sbjct 2379 AATATTTATAAATTGTATAAAAACACTGTTATTCTCAACAATAAAAGGAAGGTCAAAGAT 2438
Query 2636 ATAATATGAGACTGAGTTTCACTATAAAGTACACAACTTTTA 2677
||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2439 ATA-TATGAGACTGAGTTTCACTAGAAAGTACACAACTTTTA 2479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100977239495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5