BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08580.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478157 jgi|Araly1|478157|fgenesh2_kg.3__858__AT3G08580.2 2204 0.0
Ahg488169 jgi|Araly1|488169|fgenesh2_kg.6__1303__AT5G13490.1 1170 0.0
> Ahg478157 jgi|Araly1|478157|fgenesh2_kg.3__858__AT3G08580.2
Length=1531
Score = 2204 bits (1193), Expect = 0.0
Identities = 1320/1381 (96%), Gaps = 10/1381 (1%)
Strand=Plus/Plus
Query 41 AGAGTTCAAAATGGTTGATCAAGTTCAGCACCCCACTATTGCGCAGAAAGCTGCCGGGCA 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 153 AGAGTTCAAAATGGTTGATCAAGTTCAGCACCCCACTATTGCGCAGAAAGCTGCTGGGCA 212
Query 101 GTTCATGCGTTCAAGTGTTTCCAAGGACGTTCAAGTGGGTTACCAGAGGCCTTCTATGTA 160
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 213 GTTCATGCGTTCAAGTGTTTCCAAGGACGTCCATGTGGGTTACCAGAGGCCTTCTATGTA 272
Query 161 TCAAAGACATGCAACCTACGGAAACTACTCCAATGCTGCATTTCAATTTCCT-CC-GA-C 217
|| |||||||||||||| ||||||||||||||||||||||| ||||||||| || | |
Sbjct 273 CCAGAGACATGCAACCTATGGAAACTACTCCAATGCTGCATTCCAATTTCCTCCCACATC 332
Query 218 ATCCCGGATGTTGGCAACAACTGCTTCTCCCGTGTTTGTCCAAACCCCAGGAGAGAAGGG 277
|||||||||| ||||||| ||||||||||| |||||||| ||||| || |||||||| ||
Sbjct 333 ATCCCGGATGCTGGCAACTACTGCTTCTCCTGTGTTTGTTCAAACTCCTGGAGAGAAAGG 392
Query 278 GTTCACTAACTTTGCCCTTGACTTTCTGATGGGTGGTGTTTCTGCTGCCGTCTCCAAGAC 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 393 GTTCACTAACTTTGCCCTTGACTTTCTGATGGGTGGTGTTTCTGCTGCCGTCTCAAAGAC 452
Query 338 TGCTGCTGCTCCTATTGAACGTGTTAAGCTTTTGATCCAGAACCAGGATGAGATGATTAA 397
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGCTGCTGCTCCTATTGAGCGTGTTAAGCTTTTGATCCAGAACCAGGATGAGATGATTAA 512
Query 398 AGCTGGCAGGCTTTCTGAACCCTACAAGGGTATTGGTGACTGTTTCGGCAGGACGATTAA 457
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 513 AGCTGGCAGACTTTCTGAACCTTACAAGGGTATTGGTGACTGTTTCGGTAGGACCATAAA 572
Query 458 GGATGAAGGTTTTGGTTCTCTATGGAGAGGAAACACTGCCAATGTTATCCGTTATTTCCC 517
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 573 GGATGAAGGGTTTGGTTCTCTATGGAGAGGAAACACTGCCAATGTCATCCGTTACTTCCC 632
Query 518 CACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAAAGACTTTTCAACTTTAAGAA 577
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 633 CACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAAAGGCTTTTCAACTTCAAGAA 692
Query 578 GGACAGAGATGGTTACTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGAGGAGCAGCTGG 637
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GGACAGGGATGGTTACTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGAGGAGCAGCTGG 752
Query 638 TGCCTCTTCCCTTCTGTTTGTGTACTCCCTTGACTATGCCCGTACCCGTCTAGCTAATGA 697
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 753 TGCCTCTTCCCTTCTCTTTGTGTATTCCCTTGACTATGCCCGTACCCGTCTAGCTAATGA 812
Query 698 TGCCAAGGCTGCAAAGAAAGGAGGTGGTGGAAGACAGTTTGATGGTCTTGTTGATGTCTA 757
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 813 TGCCAAGGCTGCAAAGAAAGGAGGTGGTGGCAGACAGTTTGATGGTCTTGTTGATGTCTA 872
Query 758 CAGAAAGACACTTAAGACTGATGGTATTGCTGGTCTGTACCGTGGATTCAACATCTCATG 817
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 873 CAGAAAGACACTCAAGACTGATGGTATTGCTGGTCTATACCGTGGATTCAACATCTCCTG 932
Query 818 TGTTGGTATCATTGTCTACCGTGGTCTGTACTTTGGACTCTATGACTCTGTGAAGCCTGT 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TGTTGGTATCATTGTCTACCGTGGTCTGTACTTTGGACTCTATGACTCTGTGAAGCCTGT 992
Query 878 TCTCCTCACTGGTGACTTACAGGACAGTTTCTTCGCTAGTTTCGCTCTTGGATGGGTTAT 937
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCTCCTCACTGGAGACTTACAGGACAGTTTCTTCGCTAGTTTCGCTCTTGGATGGGTTAT 1052
Query 938 TACCAATGGTGCGGGTCTTGCATCCTACCCCATTGACACTGTCCGCAGAAGAATGATGAT 997
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TACCAACGGTGCGGGGCTTGCATCCTACCCCATTGACACTGTCCGCAGAAGAATGATGAT 1112
Query 998 GACGTCTGGTGAAGCTGTCAAGTACAAGAGTTCTTTGGACGCCTTCAAGCAGATCCTCAA 1057
||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1113 GACGTCTGGTGAAGCAGTCAAGTACAAGAGTTCGTTGGACGCCTTCACCCAGATCCTCAA 1172
Query 1058 GAATGAAGGAGCCAAGTCACTCTTCAAGGGAGCTGGTGCCAACATTCTGCGTGCTGTTGC 1117
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GAACGAAGGAGCCAAGTCACTCTTCAAGGGAGCTGGTGCCAACATTCTGCGTGCTGTTGC 1232
Query 1118 AGGTGCTGGTGTGCTTTCCGGTTACGACAAATTGCAGCTGATTGTCTTCGGTAAGAAGTA 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 AGGTGCTGGTGTGCTTTCCGGTTACGACAAATTGCAGCTGATTGTCTTCGGTAAGAAGTA 1292
Query 1178 CGGATCAGGAGGTGCCTAAGCATTGCTTCTTCCTCCTTTTTTCGATTTTAATTGCGGTTT 1237
||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1293 CGGATCAGGAGGTGCTTAAGCATTGCTTCTTCTTC-TTTTTCCGATTTTAATTGCGGTTT 1351
Query 1238 TAAGGCCCGCAATAAACTGAGATGTTGATGAAAttttttttGCTTAAGACTTAGGGAGGC 1297
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TAAGACCCGCAAGAAACTGAGATGTTGATGAAATTTTTTTTGCTTAAGACTTAGGGAGGC 1411
Query 1298 ATGTGCCCTAAACCAAATTTTATATCGTTCTGACGCCAACttttttt-----ACTTATGG 1352
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1412 ATGTGCCCTAAACCAAATTTTATATCCTTCTGACGCCAACTTTTTTTTTTTTACTTATGG 1471
Query 1353 AATAATTCATGTTTGAGAGAGTTTGTTAGACTCTTCGATTTTAAAGAATTTTGGATTTAT 1412
|||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1472 AATAATTCGTGTTTGAGAGAGTTA-TTAGACTCTTCGATTTAAAAGAATTTTGGATTTAT 1530
Query 1413 G 1413
|
Sbjct 1531 G 1531
> Ahg488169 jgi|Araly1|488169|fgenesh2_kg.6__1303__AT5G13490.1
Length=1356
Score = 1170 bits (633), Expect = 0.0
Identities = 1006/1182 (85%), Gaps = 41/1182 (3%)
Strand=Plus/Plus
Query 41 AGA-GTTCAAAATGGTTGATCAAG-TTCAGCACCCCACTATTGC-GCAGAAAGCTGCCGG 97
||| ||| ||||||||||| | || |||||||||||| ||| | |||||| ||| | ||
Sbjct 79 AGAGGTT-AAAATGGTTGAAC-AGACTCAGCACCCCACGATT-CTGCAGAAGGCTTCTGG 135
Query 98 GCAGTTCATGCGTTCAAGTGTTTC-CAAGG--A--CGT--TCAAG--T-GGGTTACCAGA 147
|| || ||||||| ||||||| | ||| | ||| | | | | | || |||||
Sbjct 136 CCAAATCTTGCGTTCCGGTGTTTCTC-AGGACATTCGTGGTTATGCTTCCGCTTTCCAGA 194
Query 148 GGCCTTCTATGTATCAAAGACATGCAACCTACGGAAACTACTCCAATGCTGCATTTCAAT 207
||||| | | || || || |||||| | |||||||||||||||||||||||||| ||||
Sbjct 195 GGCCTGCCACATACCAGAGGCATGCAGCTTACGGAAACTACTCCAATGCTGCATTCCAAT 254
Query 208 TTCCTC------C-GACATCCCGGATGTTGGCAACAACTGCTTCTCCCGTGTTTGTCCAA 260
||||| | | |||| | || || ||||||||| ||||||||||||||||||||
Sbjct 255 ATCCTCTTGTGGCTG-CATCTC-GA-ATT-GCAACAACTACTTCTCCCGTGTTTGTCCAA 310
Query 261 ACCCCAGGAGAGAAGGGGTTCACTAACTTTGCCCTTGACTTT-CTGATGGGTGGTGTTTC 319
|| ||||||||||| || || ||||||||||| |||| ||| |||||||||||||||||
Sbjct 311 ACTCCAGGAGAGAAAGGATTTACTAACTTTGCGATTGA-TTTCCTGATGGGTGGTGTTTC 369
Query 320 TGCTGCCGTCTCCAAGACTGCTGCTGCTCCTATTGAACGTGTTAAGCTTTTGATCCAGAA 379
|||||| || || ||||||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct 370 TGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAGCTTTTGATTCAAAA 429
Query 380 CCAGGATGAGATGATTAAAGCTGGCAGGCTTTCTGAACCCTACAAGGGTATTGGTGACTG 439
||||||||||||| |||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct 430 CCAGGATGAGATGCTTAAGGCTGGAAGACTCTCTGAGCCCTACAAGGGTATTGGTGACTG 489
Query 440 TTTCGGCAGGACGATTAAGGATGAAGGTTTTGGTTCTCTATGGAGAGGAAACACTGCCAA 499
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 490 TTTCGGCAGGACAATTAAGGATGAAGGGTTTGGTTCTCTGTGGAGAGGAAACACCGCTAA 549
Query 500 TGTTATCCGTTATTTCCCCACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAAAG 559
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 550 TGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTCAAAGATTACTTCAAGAG 609
Query 560 ACTTTTCAACTTTAAGAAGGAC-AGAGATGGTTACTGGAAGTGGTTTGCTGGTAACTTGG 618
||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 610 GCTTTTCAACTTCAAGAAAGACAAG-GATGGCTACTGGAAGTGGTTTGCTGGTAACTTGG 668
Query 619 CATCTGGAGGAGCAGCTGGTGCCTCTTCCCTTCTGTTTGTGTACTCCCTTGACTATGCCC 678
|||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 669 CATCTGGAGGTGCTGCTGGGGCCTCTTCCCTTCTCTTTGTGTACTCTCTTGACTATGCGC 728
Query 679 GTACCCGTCTAGCTAATGA-TGCCAAGGCTGCAAAGAAAGGAGGTGGTGGAAGACAGTTT 737
|||||||||| || ||||| | ||||| |||| ||||| ||||| || ||| |||||
Sbjct 729 GTACCCGTCTTGCCAATGACT-CCAAGTCTGCCAAGAAGGGAGG-GGA--AAGGCAGTTC 784
Query 738 GATGGTCTTGTTGATGTCTACA-GAAAGACACTTAAGACTGATGGTATTGCTGGTCTGTA 796
||||| ||||||||||||||| ||| ||| || ||| | |||||||||||||| || ||
Sbjct 785 AATGGTTTTGTTGATGTCTACAAGAA-GACCCTCAAGTCCGATGGTATTGCTGGACTTTA 843
Query 797 CCGTGGATTCAACATCTCATGTGTTGGTATCATTGTCTACCGTGGTCTGTACTTTGGACT 856
|||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 844 CCGTGGGTTCAACATCTCCTGTGCTGGTATCATTGTCTACCGTGGTCTTTACTTTGGACT 903
Query 857 CTATGACTCTGTGAAGCCTGTTCTCCTCACTGGTGACTTACAGGACAGTTTCTTCGCTAG 916
|| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct 904 GTACGACTCTGTGAAGCCTGTCCTCCTGACTGGTGACTTGCAGGACAGCTTCTTTGCTAG 963
Query 917 TTTCGCTCTTGGATGGGTTATTACCAATGGTGCGGGTCTTGCATCCTACCCCATTGACAC 976
||| |||||||||||| | || || ||||||||||||||||| |||||||| ||||||||
Sbjct 964 TTTTGCTCTTGGATGGCTCATCACTAATGGTGCGGGTCTTGCGTCCTACCCGATTGACAC 1023
Query 977 TGTCCGCAGAAGAATGATGATGACGTCTGGTGAAGCTGTCAAGTACAAGAGTTCTTTGGA 1036
|| || ||||||||||||||||| || |||||||| || |||||||| ||||| ||||
Sbjct 1024 GGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCCGTGAAGTACAAAAGTTCGATGGA 1083
Query 1037 CGCCTTCA-AGCAGATCCTCAAGAATGAAGGAGCCAAGTCACTCTTCAAGGGAGCTGGTG 1095
|| ||| | |||||||| ||||| |||||||||| ||| || |||||||| |||||||
Sbjct 1084 TGCGTTCTCA-CAGATCCTGAAGAAGGAAGGAGCCAGGTCTCTGTTCAAGGGTGCTGGTG 1142
Query 1096 CCAACATTCTGCGTGCTGTTGCAGGTGCTGGTGTGCTTTCCGGTTACGACAAATTGCAGC 1155
||||||| |||||||| ||||||||||||||||||||| | || |||||||| |||||
Sbjct 1143 CCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTACGACAAGCTGCAGT 1202
Query 1156 TGATTGTCTTCGGTAAGAAGTACGGATCAGGAGGTGCCTAAG 1197
| || |||||||| |||||||| ||||| |||||||||||||
Sbjct 1203 TAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAG 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5