BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08630.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928513 jgi|Araly1|928513|scaffold_300970.1 1563 0.0
Ahg478165 jgi|Araly1|478165|fgenesh2_kg.3__866__AT3G08640.1 1020 0.0
> Ahg928513 jgi|Araly1|928513|scaffold_300970.1
Length=1061
Score = 1563 bits (846), Expect = 0.0
Identities = 998/1070 (93%), Gaps = 16/1070 (1%)
Strand=Plus/Plus
Query 90 TCACAGATCATAGTGTACGAAGATGGCGGCTATGGCGGCGAAGCTTCATATATCGA-CGA 148
||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| | |||
Sbjct 1 TCACAGATCATAGGGTACGAAGATGGCGGCTATGGTGGCGAAGCTTCATTTATC-AGCGA 59
Query 149 AATCGGATCAGAGCAATGTGCGATTGCCTAGACTGATCAACCTGTCGCGTGATCCAACCG 208
|||| ||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||
Sbjct 60 AATCAGATCAGAGCAATGTGCGATTGCCGAGAGTGATCAACCTCTCGCGCGATCCAACCA 119
Query 209 CTAGAGTCTTGTTTCCACGAAACGGA-TCAGTTTCTTCGCTCCACACCAACTTCTCTTCT 267
||||||||| |||||||||| | || ||||| ||||| ||| |||||||||| ||||||
Sbjct 120 CTAGAGTCTCGTTTCCACGACA-TGATTCAGTATCTTCACTCAACACCAACTTGTCTTCT 178
Query 268 CCAAATATAATGGTTCCATGCGCC---GGAggtggtggtggtggaagcatcggtaatcac 324
|| || | ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 179 ACACATCTCGGGGTTCCATGCGCCGGAGGAGGTGATGGTGGTGGAAGCATCGGTAATCAC 238
Query 325 ggcggtggaagtggaagcggaggaggtggtggtggtTATGGAGGTTCAGAAGAAGAAGAA 384
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 239 GGCGGTGGAAGTGGAAGCGGAGGA------GGTGGTTATGGAGGTTCAGAAGAAGAAGGA 292
Query 385 TCGTCTCCATGGGGACCATTAGGGTTATTTATCCAAGGATGGAGATCACGAGTTGCAGCT 444
|||||| ||||||||||| |||| |||| || ||||||||||||||||||||||||||
Sbjct 293 TCGTCTTCATGGGGACCAATAGGAATATTCATACAAGGATGGAGATCACGAGTTGCAGCA 352
Query 445 GATTCTCAATTCCCTTTCAAGGTACTAATGGAA-ATGCTTGTTGGTGTTAGCGCCAATGT 503
||| |||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 353 GATCCTCAGTTCCCTTTCAAGGTACTAATGGAAGA-GCTTGTTGGAGTTAGCGCCAATGT 411
Query 504 ACTTGGCGACATGGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACTTGGCGACATGGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTC 471
Query 564 CACTCTCGTTGTAGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCTTCTGC 623
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 CACACTCGTTGTAGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCCTCTGC 531
Query 624 AATATCTCATGGATCCTCCAATTTGTTGCCTGGAATCTTTAGAAGCTGTCCTTCGAGCCA 683
| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 532 AGTATCTCATGGATCCTCCAATTTATTGCCTGGAATCTTTAGAAGCTGTCCATCGAGCCA 591
Query 684 TATGTTTGAACAGGGTAACTTCACCCTTATGAACCGTTTTGGGACTCTTGTGTACAAAGG 743
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 592 TATGTTTGAACAGGGTAGCTTCACTGTAATGAACCGTTTTGGGACTCTTGTGTACAAAGG 651
Query 744 AATGGTTTTTGCTACCGTGGGATTAGCTGCAGGTCTTGTTGGAACCGCTATCTCTAACGG 803
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 652 AATGGTTTTTGCGACCGTGGGATTAGCTGCAGGTCTAGTTGGAACCGCTATCTCTAACGG 711
Query 804 GTTGATCATGCTGAGGAAAAAGATTGATCCGAGCTTCGAAACGCCGAACAAACCACCACC 863
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 712 GTTGATCATGCTGAGGAAGAAGATGGATCCGAGCTTCGAAACGCCGAACAAACCACCACC 771
Query 864 TACGCTGCTGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TACGCTGCTGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTA 831
Query 924 CCAAACGTTGAATGGGGCTGAATTCTTGCTGGAAAAGTCATTGCCGCCATTGGTGTTTAA 983
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 832 CCAAACGTTGAATGGGGCTGAGTTCTTGCTGGAAAAGTCGTTGCCGCCATTGGTGTTTAA 891
Query 984 AACAAGTGTGATTGCTTTGAGGGTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTAC 1043
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GACAAGTGTGATAGCGTTGAGGGTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTAT 951
Query 1044 ATTGGCGAGGATGACTGGATCACAGTCGGTggaggaggagaagaagatagagatgtcaga 1103
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 ATTGGCGAGGATGACTGGATCACAGTCTGTGGAGGAGGAGAAGAAGATAGAGATGTCAGA 1011
Query 1104 gatatcagagaaggagaaagaggattgaatctcttagagagTTTCttttt 1153
|||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1012 GATATCAGAGAAGGAGAAAGAGGATTGAATATCTTATAGAGTTT-TTTTT 1060
> Ahg478165 jgi|Araly1|478165|fgenesh2_kg.3__866__AT3G08640.1
Length=1297
Score = 1020 bits (552), Expect = 0.0
Identities = 852/995 (86%), Gaps = 27/995 (3%)
Strand=Plus/Plus
Query 109 AAGATGGCGGCTATGGCGGCGAAGCTTCATA-TATCGACGAAATCGGATCAGAGCAATGT 167
||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||| |||
Sbjct 91 AAGATGGCGGCTATGGCGGCGAAGCTTCA-ACTATCGGCGAAATCGGATCAAAGCAGTGT 149
Query 168 GCGATTGCCTAGACTGATCAACCTGTCGCGTGATCCAACCG-CTAGAGTCTTGTTTCCAC 226
||||| || ||| ||||||| || || || ||||||| || ||||| ||| |||||| |
Sbjct 150 ACGATTACCGAGAGTGATCAATCTCTCACGCGATCCAA-CGACTAGAATCTCGTTTCCGC 208
Query 227 GAAACGGATCAGTTTCTTCGCTCCACACCAACTTCTCTTCTCCAAATATAATGGTTCCAT 286
|||| |||||||||| ||| |||||||||| |||||||||||| || | | || |
Sbjct 209 GAAATGGATCAGTTTGTTCACTCCACACCAGTTTCTCTTCTCCACATCTCCCGAAACCTT 268
Query 287 GCGCCGGAggtggtggtggtggaagcatcggtaatcacggcggtggaagtggaagcggag 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 269 GCGCCGGAGGTGGTGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGCGGGG 328
Query 347 gaggtggtggtggtTATGG-AGGTTCAGAAGAAGAAGAATCGTCTCCATGGGGACCATTA 405
|||| || ||| | | || || | || || ||||||||| ||||||||||||||| ||
Sbjct 329 GAGGAGGAGGT--TCA-GGCAG-TGAAGCAGGAGAAGAATCATCTCCATGGGGACCAATA 384
Query 406 GGGTTATTTATCCAAGGATGGAGATCACGAGTTGCAGCTGATTCTCAATTCCCTTTCAAG 465
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 385 GGGTCATTCATCCAAGGATGGAGATCACGAGTTGCAGCTGATCCTCAATTCCCTTTTAAG 444
Query 466 GTACTAATGGAA-ATGCTTGTTGGTGTTAGCGCCAATGTACTTGGCGACATGGCTTCACG 524
|||||||||||| | | ||||||| ||||||| ||| || || ||||||||||| ||
Sbjct 445 GTACTAATGGAAGA-GATTGTTGGACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCGCG 503
Query 525 CCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCCACTCTCGTTGTAGGTTCGAT 584
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 504 CCCGAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCGACACTCGTTGTAGGTTCGAT 563
Query 585 TCTCAATTTCACACTCATGTACCTCTTAGCTCCTTCTGCAATATCTCATGGATCCTC-CA 643
|||||||||| |||||||||| | ||||||||| ||||| | ||| ||| ||||| ||
Sbjct 564 TCTCAATTTCGTACTCATGTACATGTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCA 623
Query 644 -ATTTGTTGCCTGGAATCTTTAGAAGCTGTCCTTCGAGCCATATGTTTGAACAGGGTAAC 702
| | | ||||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 624 GACCT-T-GCCTGGAATCTTTAGAAACTGTCCATCAAGCCATATGTTTGAACAGGGTAGC 681
Query 703 TTCACCCTTATGAACCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTTTGCTACCGTG 762
||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 682 TTCACGGTTATGAATCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTTTGCCAGTGTA 741
Query 763 GGATTAGCTGCAGGTCTTGTTGGAACCGCTATCTCTAACGGGTTGATCATGCTGAGGAAA 822
|||||||||||||||||||| || || || |||||||| ||||||||||||||||||||
Sbjct 742 GGATTAGCTGCAGGTCTTGTAGGTACTGCCATCTCTAATGGGTTGATCATGCTGAGGAAG 801
Query 823 AAGATTGATCCG-AGCTTCGAAACGCCGAACAAACCACCACCTAC-GCTGCTGAATTCTT 880
||||| || ||| | ||| |||||||| |||||||| ||||| || | |||| ||||| |
Sbjct 802 AAGATGGACCCGGA-CTTTGAAACGCCAAACAAACCGCCACCGACTG-TGCTTAATTCCT 859
Query 881 TAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTACCAAACGTTGAATGGGG 940
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 860 TAACTTGGGCTACGCATATGGGAGTGAGCGCGAATGTGAGGTACCAAACGTTGAATGGGA 919
Query 941 CTGAATTCTTGCTGGAAAAG-TCATTGCCGCCATTGGTGTTTAAAACAAGTGTGATTGCT 999
||| |||||||||| |||| | || ||||| ||||||||||| || |||| | || |
Sbjct 920 TTGAGTTCTTGCTGGCAAAGGTG-TTACCGCCTTTGGTGTTTAAGACCGGTGT-AGTGGT 977
Query 1000 TT-GAGG-GTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTACATTGGCGAGGATGA 1057
|| |||| || | ||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 978 TTTGAGGTGT-GCGAATAATGTTGCGGGAGGAATGTCGTTTGTTATGTTGGCGAGGCTGA 1036
Query 1058 CTGGATCACAGTCGGTggaggaggaga-agaagat 1091
| |||||||||||||| |||||| ||| ||| |||
Sbjct 1037 CAGGATCACAGTCGGTTGAGGAGAAGACAGA-GAT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5