BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08690.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1 1153 0.0
Ahg903729 jgi|Araly1|903729|Al_scaffold_0003_857 532 1e-150
> Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1
Length=731
Score = 1153 bits (624), Expect = 0.0
Identities = 704/741 (95%), Gaps = 12/741 (2%)
Strand=Plus/Plus
Query 90 CTTTGCACTCCATTTTTATTCTCGATTCTCTTCTCTCCCGATAAAGAAGCTCTCGCTTTG 149
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1 CTTTGCACTCAATTTTTATTCTCGATTCTCTCCTCTCCCGATATAGAAGCTCTCGCTTTG 60
Query 150 TGTTGTCCGTCCTTCTTCCAGGTTTTCTC-GTCTCTGACGCATGGCTTCTAAGAGGATCT 208
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 61 TGGTGTCCGTCCTTCTTCCAGGTTTTCTCTCTCTCTGACGCATGGCTTCTAAGAGGATTT 120
Query 209 TGAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGTCCGGTGG 268
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGTCCTGTGG 180
Query 269 CTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCG 328
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CTGAGGACATGTTCCACTGGCAAGCAACTATCATGGGACCTCCTGAAAGTCCGTATGCCG 240
Query 329 GAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGG 300
Query 389 TGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTG 360
Query 449 ATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGGTTCTGTTGTCGATTT 508
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 361 ATATTTTGAAAGAGCAATGGAGTCCTGCTCTTACTATATCCAAGGTTCTGTTGTCGATTT 420
Query 509 GCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGT 568
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GCTCGCTGCTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCATATGT 480
Query 569 ACAAGACAGATAGATCCAAGTACGAGTCAACTGCGAGAAGCTGGACACAAAAGTACGCAA 628
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ACAAGACAGATAGATCCAAGTACGAGTCAACTGCGAGAAGCTGGGCACAAAAGTACGCAA 540
Query 629 TGGGTTGATGATATAAGACAAAGCAAAGGATATGTTATTGCGCATCGGAATAAAAT-AAT 687
||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 541 TGGGTTGATGATA-A-GACAAAGCAAAGGATATGTTATTGCGCATGGGAATAAAATTAA- 597
Query 688 AACTTaaaaaaaaTGCACTTGTTTGGTTTATCAAACGTTAGCAAGTATCGAACAACTTAG 747
|| ||||||||||||||||||||||||| ||||||||| || |||| |||||||||||
Sbjct 598 AA---AAAAAAAATGCACTTGTTTGGTTTAGCAAACGTTATCATGTAT-GAACAACTTAG 653
Query 748 CTGCTCTTACTCCTCTTCTGTTCTGATCACTATAAACTAGTATTAATTTCGATTGTTGGG 807
|||||||| |||||||||||||||||| |||||||||| | ||| |||||||| |||||
Sbjct 654 TTGCTCTTAGTCCTCTTCTGTTCTGATCGCTATAAACTA-T-TTA-TTTCGATTTTTGGG 710
Query 808 TCTACTTTTATTCTCTTGTTT 828
|||||||||| ||||||||||
Sbjct 711 TCTACTTTTACTCTCTTGTTT 731
> Ahg903729 jgi|Araly1|903729|Al_scaffold_0003_857
Length=453
Score = 532 bits (288), Expect = 1e-150
Identities = 395/444 (89%), Gaps = 17/444 (4%)
Strand=Plus/Plus
Query 203 GGATCTTGAA-GGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGT 261
|||| || || ||| |||| ||| || |||| |||||||||| ||||||| ||||| |||
Sbjct 17 GGAT-TTCAAGGGAACTCAGGGACCTTCAGAGGGATCCTCCTGCAAACTGTAGCGCAGGT 75
Query 262 CCGGTGGCTG---AGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCC-TGAAAG 317
|| ||||||| ||||||||| |||||||||||| |||||||||||||| || ||| ||
Sbjct 76 CCTGTGGCTGAAAAGGACATGTACCATTGGCAAGCGACTATCATGGGACC-CCATGACAG 134
Query 318 TCCGTATGCCGGAGGAGTGTTTTTGGT-TTCTATTCATTTCCCTCCGGATTATCCTTTCA 376
||||| | ||||||| || |||||||| | |||||||||||| ||||||| |||||||
Sbjct 135 TCCGTTTTCCGGAGGCGTATTTTTGGTCAAC-ATTCATTTCCCTTCGGATTACCCTTTCA 193
Query 377 AGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAA 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAA 253
Query 437 GTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGGTTC 496
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 254 GTATTTGCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATATCCAAGGTTT 313
Query 497 TGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGA 556
|||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||
Sbjct 314 TGTTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTCTTGTGGCGGAGA 373
Query 557 TAGCTCA-CATGTACAAG-ACAGATAGATCCAAGTACGAGTCAACTG-CG-AGAAGCTGG 612
||||||| | |||||||| | | ||| ||||||||||||||||| || || | |||||||
Sbjct 374 TAGCTCAAC-TGTACAAGGAAA-ATAAATCCAAGTACGAGTCAA-TGGCGCA-AAGCTGG 429
Query 613 ACACAAAAGTACGCAATGGGTTGA 636
||||| |||||||||||||| |||
Sbjct 430 ACACAGAAGTACGCAATGGGATGA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5