BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08940.2
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478197 jgi|Araly1|478197|fgenesh2_kg.3__898__AT3G08940.2 1472 0.0
> Ahg478197 jgi|Araly1|478197|fgenesh2_kg.3__898__AT3G08940.2
Length=972
Score = 1472 bits (797), Expect = 0.0
Identities = 880/920 (96%), Gaps = 6/920 (1%)
Strand=Plus/Plus
Query 1 TACAAACCGCAAACGCGACAGAACTAACTAACGACGCCGGAGATGGCCGCCACTTCAACC 60
||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1 TACAAACCGCAAACGCGAC---A-TAACTAACGACGCCGGAGATGGCTGCCACTTCAACC 56
Query 61 GCCGCTGCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCAATTCA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 57 GCCGCTTCTGCTTCTTCAATCATGGGTACCCGGGTGGTTTCCGACATTAGCTCCGGTTCA 116
Query 121 AGCCGGTTCACAGCCCGGTTCGGATTCGGAACCAAGAAAGCATCTCCCAAAAAGGCTAAG 180
| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 117 ACCCGGTTCACAGCCCGGTTCGGATTCGGAACTAAGAAAGCCGCTCCTAAAAAGGCTAAG 176
Query 181 ACGGTTATCTCAGACCGGCCTCTATGGTTCCCAGGCGCAAAATCACCC-GAATATCTCGA 239
||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 177 ACGGTTATCTCAGACCGGCCTTTATGGTTCCCAGGCGCAAAATC-CCCAGAGTATCTCGA 235
Query 240 CGGTTCACTTGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGCAAACCGGCGGAGTA 299
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 236 CGGTTCACTGGTCGGGGACTACGGGTTCGATCCTTTTGGTTTAGGTAAACCGGCGGAGTA 295
Query 300 TCTCCAATTCGATTTGGATTCCTTGGACCAGAACTTAGCCAAGAACTTATACGGAGAAGT 359
|||||||||||||||||| ||||||||||||||| | |||||||||||| |||||| ||
Sbjct 296 TCTCCAATTCGATTTGGACTCCTTGGACCAGAACCTCGCCAAGAACTTAGCCGGAGACGT 355
Query 360 GATCGGGACTCGTACCGAGGCGGTGGACCCCAAATCGACGCCGTTTCAGCCATATAGTGA 419
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 356 GATCGGGACCCGTACCGAGGCGGTGGATCCCAAATCGACGCCGTTTCAGCCATACAGTGA 415
Query 420 AGTCTTCGGGCTACAAAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCT 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGTCTTCGGGCTACAGAGATTCAGAGAATGTGAGCTGATTCACGGTCGGTGGGCAATGCT 475
Query 480 CGCCACTCTTGGCGCTATCACCGTCGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGG 539
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 CGCCACTCTCGGCGCTATCACCGTAGAATGGCTCACCGGTGTTACTTGGCAAGACGCCGG 535
Query 540 CAAGGTAGAGCTAGTGGATGGATCATCTTACTTAGGACAGCCATTGCCGTTCTCTATCTC 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 CAAGGTAGAGCTAGTGGATGGATCGTCTTACTTAGGACAGCCATTGCCGTTCTCTATCTC 595
Query 600 GACATTGATATGGATCGAAGTGTTAGTGATCGGCTACATTGAGTTCCAACGAAACGCTGA 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 GACATTGATATGGATCGAAGTGTTAGTGGTCGGCTACATTGAGTTCCAACGAAACGCTGA 655
Query 660 ACTGGACTCGGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGC 719
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCTGGACTCAGAGAAGCGTTTGTATCCAGGAGGCAAGTTCTTTGACCCGTTAGGACTAGC 715
Query 720 GTCTGACCCGGTGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGC 779
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATCTGACCCGGAGAAGAAGGCTCAGCTTCAGCTAGCTGAGATCAAACATGCTCGTTTAGC 775
Query 780 CATGGTTGGATTCTTGGGTTTTGCGGTTCAGGCGGCTGCAACCGGTAAAGGACCGCTCAA 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 776 CATGGTTGGATTCTTGGGTTTTGCTGTTCAGGCGGCTGCAACCGGTAAAGGACCCCTCAA 835
Query 840 CAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAACTGGGCGACTCACCTTAGTGACCCACTTCACACCACCATTATCGATACCTTCTCTTC 895
Query 900 CTCCTGATGTGGTGGCTTTT 919
||| ||||||||||||||||
Sbjct 896 CTCTTGATGTGGTGGCTTTT 915
Score = 91.6 bits (49), Expect = 1e-17
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 975 TGTAATGATGTAACGTCGTTATTTTAAAGAAAATTTGGCACCTTTTGTATAAACGGAA 1032
||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 915 TGTAATGATGTAATGTCGCTATTTTAAAGAAAATTTGGCACCTTTTGTATAAACAGAA 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5