BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09010.1
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928555 jgi|Araly1|928555|scaffold_301012.1 1938 0.0
> Ahg928555 jgi|Araly1|928555|scaffold_301012.1
Length=1224
Score = 1938 bits (1049), Expect = 0.0
Identities = 1169/1227 (95%), Gaps = 8/1227 (1%)
Strand=Plus/Plus
Query 314 ATTTTTGTC-TGTGTTTGTGATGCGTTATAATTGCTTCGGACTTCTAGATATGTGCAACG 372
||||||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||| |
Sbjct 2 ATTTTTGTCGAGTGGTTGTGATGCGTTATAATTGTTTCGGACTTCTTGCTATGTGCAAAG 61
Query 373 GAAGTGATCGTCTTGGACAAAGAGAAGCTGAAGAGATTTGCACCAACAATGTGAGGGTCT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAAGTGATCGTCTTGGACAAAGAGAAGCTGAAGAGATTTGCACCAACAATGTGAGGGTCT 121
Query 433 TTTCATATAATTCATTAAGATCAGCCACTGATAGTTTCCATCCAACGAACAGAATCGGAG 492
|||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 122 TTTCATATAACTCATTAAGATCTGCCACTGATGGTTTCCATCCAACGAAGAGAATCGGAG 181
Query 493 GTGGTGGCTATGGCGTTGTCTTTAAGGGAGTTTTGAGAGATGGCACACAAGTAGCTGTGA 552
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 GTGGTGGCTATGGAGTTGTCTTTAAGGGAGTTTTAAGAGATGGCACACAAGTAGCTGTGA 241
Query 553 AATCACTATCAGCAGAATCTAAACAAGGGACACGCGAGTTCTTGACCGAGATTAACTTGA 612
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGTCACTATCAGCAGAATCTAAACAAGGGACACGCGAGTTCTTGACCGAGATTAACTTGA 301
Query 613 TATCAAACATTCATCATCCTAACCTTGTTAAACTCATCGGTTGCTGCATCGAAGGGAACA 672
|||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 302 TATCGAACATTCATCATCCTAACCTTGTTAACCTCATTGGCTGCTGCATCGAAGGGAACA 361
Query 673 ATCGGATTCTTGTCTATGAGTACCTTGAGAACAACAGTCTTGCTAGTGTTTTGCTTGGTT 732
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ACCGGATTCTCGTATATGAGTACCTTGAGAACAACAGTCTTGCTAGTGTTTTGCTTGGTT 421
Query 733 CAAGGAGTAGATATGTACCGCTTGATTGGTCCAAAAGAGCTGCGATTTGCGTTGGGACAG 792
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 CAAGGAGTAGATATGTACCGCTTGATTGGTCCAAAAGAGCTGCGATTTGTGTTGGGACAG 481
Query 793 CTTCGGGTTTAGCTTTCCTTCACGAGGAAGTCGAACCTCATGTTGTTCACCGTGACATCA 852
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 482 CTTCGGGTTTAGCTTTCCTTCACGAGGAAGTTGAACCTCAGGTTGTTCACCGTGACATTA 541
Query 853 AGGCGAGTAATATCTTACTAGACTC-AAACTTTTCTCCCAAAATTGGTGATTTCGGGTTG 911
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 542 AGGCGAGTAATATCTTACTAGAC-CGAAACTTTTCTCCCAAAATTGGAGATTTCGGGTTG 600
Query 912 GCTAAGCTTTTTCCAGACAATGTCACTCATGTCAGTACCCGAGTCGCTGGAACAGTGGGA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTAAGCTTTTTCCAGACAATGTCACTCATGTCAGTACCCGAGTCGCTGGAACAGTGGGA 660
Query 972 TACTTGGCTCCAGAATATGCACTTCTTGGTCAACTGACaaaaaaaGCAGACGTTTACAGC 1031
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 661 TACTTGGCTCCAGAATATGCACTTCTTGGTCAATTGACAAAAAAAGCGGACGTTTACAGC 720
Query 1032 TTCGGGATACTTGTGCTTGAGGTCATTAGTGGTAATAGTAGCACCAGAGCCGCCTTTGGA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCGGGATACTTGTGCTTGAGGTCATTAGTGGTAATAGTAGCACCAGAGCCGCCTTTGGA 780
Query 1092 GACGAGTACATGGTTCTTGTTGAATGGGTGTGGAAGCTGAGAGAAGAAAGGAGGCTACTA 1151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACGATTACATGGTTCTTGTTGAATGGGTGTGGAAGCTGAGAGAAGAAAGGAGGCTACTA 840
Query 1152 GAGTGTGTAGATCCAGAACTAACCAAGTTCCCCGCAGATGAAGTGACCCGTTTCATCAAG 1211
|| ||||||||| | || |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 841 GAATGTGTAGATACGGATCTAACCAAGTTCCCCGAAGACGAAGTGACCCGTTTCATCAAG 900
Query 1212 GTGGCTCTTTTCTGCACTCAAGCCGCGGCGCAAAAGAGACCAAACATGAAGCAAGTGATG 1271
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 GTGGCTCTATTCTGCACTCAAGCCGCGGCGCAAAAGAGACCAAACATGAAGCAAGTGGTG 960
Query 1272 GAGATGCTTCGCAGGAAAGAGCTTAACCTCAACGAGGATGCCTTAACGGAACCTGGCGTC 1331
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GAGATGCTTTGCAGGAAAGAGCTTAACCTCAACGAGGATGCCTTAACGGAACCTGGTGTC 1020
Query 1332 TACAGAGGTGTCAACAGGGGACGCAACCACCGTGGAATCGGTCTTAG-GGTCGGCCAAGG 1390
|||||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1021 TACAGAGGTGTCAACAAGGGACGCAACCACCGTGGCATCGGTCTTAGAGG-CGGCCAAGG 1079
Query 1391 AGGCAGCTCACAGGAGAGCTCGTCAACGCAACGTGACAAAGGGAAAAGCTCAGCCGTTCC 1450
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1080 CGGCAGCTCACAGGAGAGCTCGTCAACGCAACGTTACAAAGGGCAAAGCTCAGCCGTTCC 1139
Query 1451 TCAAGGGTCGACGTCCAAC-TCTAATATTTCCTTCCAGAGCATCACAGAGTTGGCTCCTA 1509
|||||| | |||||| | |||||||||||||| ||||||||||||||||||| |||||
Sbjct 1140 ACAAGGGCCAACGTCCT-CGTCTAATATTTCCTTTCAGAGCATCACAGAGTTGGATCCTA 1198
Query 1510 GATGAtttttttCTGTTAATAGAGCAC 1536
||||||||||| ||||| |||||||||
Sbjct 1199 GATGATTTTTT-CTGTTGATAGAGCAC 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63915431110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5