BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09200.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478235 jgi|Araly1|478235|fgenesh2_kg.3__936__AT3G09200.1 1799 0.0
Ahg478465 jgi|Araly1|478465|fgenesh2_kg.3__1166__AT3G11250.1 1199 0.0
Ahg483041 jgi|Araly1|483041|fgenesh2_kg.4__2101__AT2G40010.1 625 3e-178
> Ahg478235 jgi|Araly1|478235|fgenesh2_kg.3__936__AT3G09200.1
Length=1171
Score = 1799 bits (974), Expect = 0.0
Identities = 1114/1179 (94%), Gaps = 19/1179 (2%)
Strand=Plus/Plus
Query 1 GCTGATACCAAAACCCTAATTTCTTTACGTCAAACTCTCTCTATACACAGAGTTAAATTG 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 GCTGATACCAAAACCCTAATTTCTTTACGTCAAACTCTCTC--TGCACAGAGTTAAATTG 58
Query 61 AGTTTGTGTC-TCGTAACTTATCCTGTGAGCGAAAATGGTGAAAGCAACTAAGGCAGAGA 119
||||||| || | || | ||||||| |||||||||||||||||||| || || |||||||
Sbjct 59 AGTTTGTATCGTGGT-A-TTATCCTTTGAGCGAAAATGGTGAAAGCTACCAAAGCAGAGA 116
Query 120 AGAAGATCGCCTACGATACCAAGCTATGTCAGCTTATCGATGAGTACACCCAGATCTTGG 179
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 AGAAGATCGCTTACGACACCAAGCTATGTCAGCTTATCGATGAGTACTCCCAGATCTTGG 176
Query 180 TCGTTGCGGCCGATAACGTCGGATCAACTCAGCTTCAGAACATCAGAAAGGGTCTTCGTG 239
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 177 TCGTTGCGGCCGATAACGTCGGATCGACTCAGCTCCAGAACATCAGAAAGGGTCTTCGTG 236
Query 240 GAGACTCCGTCGTGCTTATGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACT 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAGACTCCGTGGTGCTTATGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACT 296
Query 300 CTGAGAACACCGGAAACACTGCAATCCTGAATCTGCTTCCTCTCCTTCAGGGAAACGTTG 359
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 CTGAGAACACTGGAAACACTGCAATCCTCAATCTGCTTCCTCTCCTTCAGGGAAACGTTG 356
Query 360 GTTTGATCTTTACCAAAGGTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTTTGATCTTTACCAAAGGTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGG 416
Query 420 TTGGTGCCCCTGCTCGTGTGGGTTTGGTGGCTCCAATTGATGTGGTTGTCCAACCTGGCA 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 TTGGTGCCCCTGCTCGTGTGGGTTTGGTTGCTCCAATTGATGTGGTTGTCCAACCTGGCA 476
Query 480 ACACTGGTCTCGACCCATCCCAAACATCTTTCTTCCAGGTGCTTAACATCCCAACCAAGA 539
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 477 ACACTGGTCTCGACCCATCCCAGACATCTTTCTTCCAGGTTCTTAACATCCCAACCAAGA 536
Query 540 TTAACAAGGGTACCGTCGAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGG 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTAACAAGGGGACCGTCGAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGG 596
Query 600 TCGGGTCTTCTGAGGCTGCGCTTCTAGCCAAGCTTGGCATCAGGCCGTTCTCATATGGTC 659
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 597 TCGGATCTTCTGAGGCTGCCCTTCTAGCCAAGCTTGGCATCAGGCCTTTCTCATATGGTC 656
Query 660 TTGTTGTCCAGTCTGTCTATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTA 719
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGTTGTCCAGTCTGTGTATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTA 716
Query 720 CTGAAGACCAACTTGTGGAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTC 779
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAGAAGACCAACTTGTTGAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTC 776
Query 780 TTGCTGTGTCGTACCCTACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGA 839
||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTGCTATTTCTTATCCTACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGA 836
Query 840 ATGCCTTGGCTATTGCTGTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGG 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGCCTTAGCTATTGCTGTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGG 896
Query 900 AATACTTGAAGGATCCAAGCAAGTTTGCTGTTGCTTCAGTAGCTGCGGTGTCTGCTGATG 959
||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||
Sbjct 897 AATTCTTGAAGGATCCAAGTAAGTTTGCTGTTGCTGCAGTAGC--CG-TGTCTGCTGATG 953
Query 960 CAGGTGGTGGTGCC----C-CA-GCTGCTGCTAAGGTAGAGGAGAAG--G-AAGAGTCCG 1010
|||||||||||| | || |||||||||||||||||||||||| | ||||||| |
Sbjct 954 CAGGTGGTGGTGGTGGTGCTCAAGCTGCTGCTAAGGTAGAGGAGAAGAAGGAAGAGTCAG 1013
Query 1011 ACGAAGAAGACTATGGAGG-TGATTTCGGTTTGTTCGATGAAGAGTAGATTTTGTCGGTT 1069
||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 1014 ACGAAGAAGACTATG-AGGGTGGTTTTGGTTTGTTCGATGAAGAGTAGATTTTGTCTATT 1072
Query 1070 AAGATCTTACCTTTTTGTCGTGGATTATAAGTGTTGCTTTGTTTTTAGTATGTTGGACCT 1129
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1073 AAGGTCTTACCTTTTTGTCGTGGATTATAAGTGTTGCTTCGTTTTTAGTATGTTGGATCT 1132
Query 1130 CAATTTTCTTGGTTTTAGCCAATCCAGTTTTATGTTACT 1168
|||||||||||||||| |||||| ||| |||||||||||
Sbjct 1133 CAATTTTCTTGGTTTTGGCCAATTCAGATTTATGTTACT 1171
> Ahg478465 jgi|Araly1|478465|fgenesh2_kg.3__1166__AT3G11250.1
Length=1162
Score = 1199 bits (649), Expect = 0.0
Identities = 876/985 (89%), Gaps = 17/985 (2%)
Strand=Plus/Plus
Query 94 AATGGTGAAAGCAACTAAGGCAGAGAAGAAGATCGCCTACGATACCAAGCTATGTCAGCT 153
||||||||| ||||| || ||||||||||||||||| || || || || |||||||||||
Sbjct 79 AATGGTGAAGGCAACGAAAGCAGAGAAGAAGATCGCTTATGACACAAAACTATGTCAGCT 138
Query 154 TATCGATGAGTACACCCAGATCTTGGTCGTTGCGGCCGATAACGTCGGATCAACTCAGCT 213
|||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 139 TATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGATAACGTCGGATCTACTCAGCT 198
Query 214 TCAGAACATCAGAAAGGGTCTTCGTGGAGACTCCGTCGTGCTTATGGGGAAGAACACTAT 273
|||||||||||| |||||||| ||||||||||| || || || ||||| |||||||||||
Sbjct 199 TCAGAACATCAGGAAGGGTCTCCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACACTAT 258
Query 274 GATGAAGCGTTCCGTTAGGATTCACTCTGAGAACACCGGAAACACTGCAATCCTGAATCT 333
|||||| ||||||||||| || ||||| |||||||| ||||||||||| || |||||||
Sbjct 259 GATGAAACGTTCCGTTAGAATCCACTCCGAGAACACTGGAAACACTGCGATTTTGAATCT 318
Query 334 GCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAGGTGACCTCAAGGAAGT 393
|||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 319 CCTTCCTCTCCTTCAGGGAAATGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGGAAGT 378
Query 394 GAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTGTGGGTTTGGTGGCTCC 453
||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct 379 GAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTGCTCC 438
Query 454 AATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCATCCCAAACATCTTTCTT 513
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 439 AATTGATGTGGTTGTTCAGCCTGGCAACACTGGTCTCGACCCATCTCAAACATCTTTCTT 498
Query 514 CCAGGTGCTTAACATCCCAACCAAGATTAACAAGGGTACCGTCGAAATCATCACCCCAGT 573
|||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||| ||
Sbjct 499 CCAGGTGCTTAATATCCCAACTAAGATTAACAAGGGTACTGTTGAAATTATCACCCCTGT 558
Query 574 TGAGCTTATCAAGCAAGGTGACAAGGTCGGGTCTTCTGAGGCTGCGCTTCTAGCCAAGCT 633
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 559 GGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCTAAGCT 618
Query 634 TGGCATCAGGCCGTTCTCATATGGTCTTGTTGTCCAGTCTGTCTATGACAATGGCTCAGT 693
||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 619 CGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGACAACGGCTCAGT 678
Query 694 CTTCAGCCCAGAGGTTCTTGATCTTACTGAAGACCAACTTGTGGAGAAGTTTGCTTCTGG 753
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 679 CTTTAGCCCAGAGGTTCTTGATCTTACAGAAGATCAACTTGTGGAGAAGTTTGCTTCTGG 738
Query 754 TATCTCCATGGTCACTTCCTTGGCTCTTGCTGTGTCGTACCCTACCCTTGCTGCTGCACC 813
||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 739 TATCTCCATGGTCACTTCCTTGGCTCTAGCTGTCTCTTACCCCACTCTTGCTGCTGCGCC 798
Query 814 GCATATGTTCATCAATGCGTACAAGAATGCCTTGGCTATTGCTGTTGCCACTGAGTACAC 873
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 799 GCATATGTTCATCAATGCATACAAGAATGCCTTAGCTATTGCTGTTGCCACTGACTACAC 858
Query 874 CTTCCCTCAAGCAGAGAAGGTCAAGGAATACTTGAAGGATCCAAGCAAGTTTGCTGTTGC 933
|||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||
Sbjct 859 TTTCCCTCAAGCAGAGAAGGTTAAGGAATTCTTAAAGGATCCTAGCAAGTTTGTTGTTGC 918
Query 934 TTCAGTAGCTGCGGTGTCTGCTGATGCAGGTGG---TGGTGCCC---C---AGCTGCTGC 984
| ||| | || ||||| || ||||||||||| |||||| | | |||||||||
Sbjct 919 TGCAGC-G--GCAGTGTCAGCGGATGCAGGTGGCAGTGGTGCTCAAGCTGGAGCTGCTGC 975
Query 985 TAAGGTAGAGGAGAAGGAAGA-G--TCCGACGAAGAAGACTATGGAGG-TGATTTCGGTT 1040
|||||| ||||||||| |||| | || |||||||||||||||| ||| || ||||||||
Sbjct 976 TAAGGTGGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATG-AGGGTGGTTTCGGTT 1034
Query 1041 TGTTCGATGAAGAGTAGATTTTGTC 1065
||||||| ||||||||| | |||||
Sbjct 1035 TGTTCGACGAAGAGTAGGTGTTGTC 1059
> Ahg483041 jgi|Araly1|483041|fgenesh2_kg.4__2101__AT2G40010.1
Length=1096
Score = 625 bits (338), Expect = 3e-178
Identities = 682/848 (80%), Gaps = 24/848 (3%)
Strand=Plus/Plus
Query 98 GTGAAAGCAACTAAGGCAGAGAAGAAGATCGCCTACGATACCAAGCTATGTCAGCTTATC 157
||||||| ||| || |||||||||||||||| |||||| | ||||| ||||||||| |
Sbjct 7 GTGAAAGGAACAAAAGCAGAGAAGAAGATCGTTTACGATTCGAAGCTTTGTCAGCTT-TT 65
Query 158 G-ATGAGTACACC-CAGA-TCTTGGTCGTTGCGGCCGATAACGTCGGATCAACTCAGCTT 214
| |||||||| || |||| |||| |||||||| || || || || ||||| |||||||||
Sbjct 66 GAATGAGTAC-CCTCAGATTCTT-GTCGTTGCAGCTGACAATGTTGGATCCACTCAGCTT 123
Query 215 CAGAACA-TCAGAAAGGGTCTT-CGTGGAGACTCCGTCGTGCTT-ATGGGGAAGAACACT 271
||||||| || |||| ||| || || || || || || || || |||||||| |||||
Sbjct 124 CAGAACATTC-GAAAAGGT-TTACGAGGTGATTCAGTTGT-TTTGATGGGGAAAAACACA 180
Query 272 ATGATGAAGCGTTCCGTTAGGATTCACT-CTGAGAACACCGG-AAACACTGCAATCCTGA 329
||||||||| | || || ||| | || | |||| || || || || || || |||| |
Sbjct 181 ATGATGAAGAGATCTGTGAGGCTCCA-TGCTGATAAAACTGGCAATCA-AGCTTTCCTCA 238
Query 330 ATCTGCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAGGTGACCTCAAGG 389
|||| |||||||| |||||||| || ||||| |||||||| || || |||||| | ||||
Sbjct 239 ATCTCCTTCCTCTTCTTCAGGGGAATGTTGGGTTGATCTTCACTAAGGGTGACTTGAAGG 298
Query 390 AAGTGAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTGTGGGTTTGGTGG 449
|||| || || ||||||||||||||||||||||| || ||||||||||| ||||| | |
Sbjct 299 AAGTCAGTGAAGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTAGGTTTAATCG 358
Query 450 CTCCAATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCATCCCAAACATCTT 509
| |||||||||||||| || ||||| |||||||||||||| ||||| || || ||||| |
Sbjct 359 CGCCAATTGATGTGGTCGTGCAACCAGGCAACACTGGTCTTGACCCTTCACAGACATCCT 418
Query 510 TCTTCCAGGTGCTTAACATCCCAACCAAGATTAACAAGGGTACCGTCGAAATCATCACCC 569
||||||||||||||||||| |||||||| || ||||| ||||| || || ||||| ||||
Sbjct 419 TCTTCCAGGTGCTTAACATTCCAACCAAAATCAACAAAGGTACGGTTGAGATCATAACCC 478
Query 570 CAGTTGAGCTTATCAAGCAAGGTGACAAGGTCGGGTCTTCTGAGGCTGCGCTTCTAGCCA 629
| || ||||| |||||| |||||||||| ||||| || ||||||||||||||||||||||
Sbjct 479 CCGTGGAGCTCATCAAGAAAGGTGACAAAGTCGGTTCATCTGAGGCTGCGCTTCTAGCCA 538
Query 630 AGCTTGGCATCAGGCCGTTCTCATATGGTCTTGTTGTCCAGTCTGTCTATGACAATGGCT 689
||||||| |||||||| ||||| ||||| || || || |||| ||||| || |||||||
Sbjct 539 AGCTTGGAATCAGGCCATTCTCTTATGGCCTCGTCGTTGAGTCAGTCTACGATAATGGCT 598
Query 690 CAGTCTTCAGCCCAGAGGTTCTTGATCTTACTGAAGACCAACTTGTGGAGAAGTTTGCTT 749
|||| || | ||| || || ||| | || ||||||||| | ||||| |||||||||||
Sbjct 599 CAGTGTTTAACCCTGAAGTGCTTAACCTCACTGAAGACGACCTTGTTGAGAAGTTTGCAG 658
Query 750 CTGGTATCTCCATGGTCACTTC-CTTGGCTCTTGCTGTGTCGTACCCTACCCTTGCTGCT 808
||||| |||| ||| |||| | ||| ||||||| | || ||||| ||| | || |||
Sbjct 659 CTGGTGTCTCGATGATCACCGCGCTTT-CTCTTGCAATATCTTACCCAACCGTAGCAGCT 717
Query 809 GCACCG-CATATGTTCATCAATGCGTACAAGAATGC-CTTGGCTATTGCTGTT-GCCACT 865
|| | | || |||||| ||||||| |||||||||| |||| | |||| || || |||
Sbjct 718 GCGC-GTCACATGTTCCTCAATGCTTACAAGAATGTTCTTGA-TGTTGCC-TTAGCTACT 774
Query 866 GAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGGAATACTTGAAGGATCCAAGCAAGTTT 925
||||| | |||||||| || ||||| || ||||| | | | |||||||||| |||||||
Sbjct 775 GAGTATTCTTTCCCTCAGGCTGAGAATGTGAAGGAGTTCCTAAAGGATCCAACCAAGTTT 834
Query 926 GCTGTTGC 933
|| |||||
Sbjct 835 GCAGTTGC 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5