BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09320.1 Length=1392 Score E Sequences producing significant alignments: (Bits) Value Ahg478246 jgi|Araly1|478246|fgenesh2_kg.3__947__AT3G09320.1 2108 0.0 > Ahg478246 jgi|Araly1|478246|fgenesh2_kg.3__947__AT3G09320.1 Length=1351 Score = 2108 bits (1141), Expect = 0.0 Identities = 1272/1334 (95%), Gaps = 14/1334 (1%) Strand=Plus/Plus Query 64 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTTTCGACGCCGGTGCT-C 122 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 20 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTCTCGACGCCGGTGCTCC 79 Query 123 CaaaaaaaaTATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 182 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 CAAAAAAAAAATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 139 Query 183 GGTGATCGGTTTCATCTACTTTGCCTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 242 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 140 GGTGATCGGTTTCATCTACTTTGCTTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 199 Query 243 CACTTCGTCTCCCGGAATCGCTAACGCCGCCGCT-TTCACCGCTTTGGCTCTGATGTGTA 301 |||||| ||||||||||| || |||||||||| | |||||||||||||||||||||||| Sbjct 200 CACTTCATCTCCCGGAATAGCCAACGCCGCCG-TGTTCACCGCTTTGGCTCTGATGTGTG 258 Query 302 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 318 Query 362 CGGATGTTGAAGATCCGGAGAGTCCTGTTCATGAGATTAAGCGAAAGGGAGGAGATTTGA 421 | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 319 CAGATGTTGAAGATCCGGAGAGTCCTGTTCACGAGATTAAGCGCAAGGGAGGAGATTTGA 378 Query 422 GGTACTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 481 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 GATATTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 438 Query 482 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGCGTAGGACACA 541 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 439 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGTGTAGGACACA 498 Query 542 CTAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATATTCTC 601 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 499 CCAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATACTCCC 558 Query 602 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 618 Query 662 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTAAGCATCGCGT 721 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 619 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTGAGCATTGCGT 678 Query 722 TAGGTGTTCTTCTGGGGTGGCACATCTACCTCATTTTACAAAACAAGACGACTATTGAGT 781 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 679 TAGGTGTTCTTCTCGGGTGGCACATCTACCTCATTTTACAAAACAAAACGACTATCGAGT 738 Query 782 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 739 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 798 Query 842 CATATGACATCGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 901 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 CATATGACATTGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 858 Query 902 GGCTCTGCCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 961 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 GGCTCTGTCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 918 Query 962 CAATCCCTGA-TTCATCTGAAACAAAACATTAGCCAAGACCCAAATCATGTATACCTTT- 1019 |||||||| | ||| ||||||||||||| |||||||||||||||||||||||| ||| | Sbjct 919 CAATCCCT-ACTTCTTCTGAAACAAAACCTTAGCCAAGACCCAAATCATGTATTCCTCTC 977 Query 1020 TT-CTGGGGAGTTCCACCGAAAAGGCAGCAGATTTTGAACTTCACAGCACACTGGCTCGT 1078 || ||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||| || Sbjct 978 TTACTGGGGAGTTCCATCGAAAAGGCTGCAGATTTTTAACTTCACAGCACTCTGGCTTGT 1037 Query 1079 CCTTTTTCAAGCATTTTAGGCGCCTCAGCTTAAAACCAAGACTGGCCCGTAATCAGTACT 1138 || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | Sbjct 1038 CCGTTTTCAAGCATTTTAGCCGCCTCAGCTTAAAACCAAGACTAGCCCGTAATCAGTAGT 1097 Query 1139 AGACTCTGCTTGGCAAGGTTCTCCCTCTCGCATCCTTGT-AACTGGATTAAGAGCATCCA 1197 |||||||||||| |||||||||| |||||||||| |||| |||||||| |||||||||| Sbjct 1098 AGACTCTGCTTGACAAGGTTCTCTCTCTCGCATCATTGTTAACTGGATCAAGAGCATCCG 1157 Query 1198 TTTGTGAAAAATATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCA-AA 1256 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1158 TTTGTGAAAATTATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCACAA 1217 Query 1257 A--A---GGAAGTTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGCTTATTATACAT 1311 | | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1218 AGGAAAAGGAAGGTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGGTTATTATACAT 1277 Query 1312 ACCACTTAACAGGCGAAAAGACATCATTGTACGATAATTTAAGGCTTTCATATTTTGTTA 1371 ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1278 ACCACTTAACAGGTGAAAAGACATCATTGTAAGATAATTAAAGGCTTTCATATTTTGTTA 1337 Query 1372 TCAGATTCAGACAC 1385 ||||| |||||||| Sbjct 1338 TCAGAATCAGACAC 1351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52031274670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5