BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09350.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1 1816 0.0
Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1 725 0.0
> Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1
Length=1299
Score = 1816 bits (983), Expect = 0.0
Identities = 1097/1152 (95%), Gaps = 7/1152 (1%)
Strand=Plus/Plus
Query 164 ATTCTTCAATGGCGAAAGACGGACCTAATTGGGATGGTTTGCTTAAGTGGAGTCTCTCTC 223
|||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||
Sbjct 146 ATTCTTCAATGGCGAAAGACGGACCTAATTGGGACGGGTTACTTAAATGGAGTCTCTCTC 205
Query 224 ACGCCGACGGTACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGG 283
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 ACGCTGACGGGACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGG 265
Query 284 AGGCTATGCAATCGCAGACTGTAGATGTAGTCAAACGCATGAAGGAGATTACACTAGTTA 343
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 266 AGGCTATGCAATCGCAGACTGTAGATGTAGTCAAGCGCATGAAGGAGATTACATTAGTTA 325
Query 344 TGCAAACACCTGAACAAGTTTTGGTGGAACATGGAGTAACACCTGAAGATATCCAAGATT 403
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 326 TGCAAACACCTGAACAAGTTTTGGTGGATCATGGAGTTACACCTGAAGATATTCAAGATT 385
Query 404 TGCTGGATGAGCTGCAAGAGCACGTTGAATCGATCGATATGGCTAACGATCTTCATTCAA 463
| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 386 TACTGGATGAGCTGCAGGAGCACGTTGAATCAATCGATATGGCTAATGATCTTCATTCAA 445
Query 464 TTGGAGGCTTGGTTCCTCTTCTTAGTTTCCTTAAAAACTCTCATGCTAATATTCGGGCAA 523
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 446 TTGGAGGCTTGGTTCCTCTTCTTGGTTTCCTTAAAAACTCTCATGCTAATATTCGGGCAA 505
Query 524 AAGCTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCTAGAAGTCAGGAACTTGTTA 583
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 506 AAGCTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCCAGAAGTCAGGAACTAGTTA 565
Query 584 TGGAAACCAATGCTCTGGAGTCATTGCTCTCGAATTTCACTTCAGACACTGATATTCACG 643
||||||| |||| | |||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 566 TGGAAACAAATGGTTTGGAGTCATTACTCTCAAATTTCACTTCAGACACAGATATTCACG 625
Query 644 CTCGAACCCAGGCTCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACCAGGAGTAA 703
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTCGAACCCAGGCCCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACCAGGAGTAA 685
Query 704 CGGCTTTCAAGCTTGCCAATGGTTATGCTGGCCTAAGAGACGCCTTGGCATCTGATAGTG 763
| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 686 CTGCTTTCAAGCTTGCCAATGGTTATGCTGGCCTAAGAGATGCTTTAGCATCTGATAGTG 745
Query 764 TGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATGATTCAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATGATTCAG 805
Query 824 ACCGCAGTATTGCCACTGGACTTGGATTCCCCCGAGTGATGATGCATCTTGCCTCTAGTG 883
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 806 ACCGCAGTATTGCGACTGGACTCGGATTCCCCCGAGTGATGATGCATCTCGCCTCTAGTG 865
Query 884 ACGATGCTGAGATCAGAGAAGCCGCTCTTCGTGGATTACTTGAGCTTTCAAGAGAGAAAA 943
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 866 ACGATGCTGAGATCAGAGAAGCCGCTCTTCGTGGATTGCTTGAGCTTGCAAGAGAGAAAA 925
Query 944 ACGAT------GGAAGTAGCAGCATAGATAAAAGCGATGAGAAACTGAGGCAGCTACTAG 997
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 ACGATGGAAGCGGAAGTAGCAGCATAGATAAAAGCGATGAGAAACTGAGGCAGCTACTAG 985
Query 998 AAGAACGGATCAAAGGAATCACCTTGATGTCACAAGAGGATCTTGAAACGGTTAAAGAAG 1057
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 986 AAGAACGGATCAAAGGAATCAGCTTGATGTCACAGGAGGATCTTGAAACGGTTAAAGAAG 1045
Query 1058 AGAGACAGCTCGTGGATTTACTGTGGAGCATTTGCTACAATGAACCTTCTTCTCTGAGAG 1117
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AGAGACAGCTCGTCGATTCACTGTGGAGCATTTGCTACAATGAACCTTCTTCTCTGAGAG 1105
Query 1118 AAAAAGGACTTGTCGTTCTTCCCGGTGAAGACGCATTGCCTCCTGATGTCGCTAGCAAGC 1177
||||||| ||| | ||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1106 AAAAAGGGCTTCTTGTTCTTCCCGGTGAAGACGAATTACCTCCTGATGTCGCAAGCAAGC 1165
Query 1178 TCTTTGAGCCTCCTCTTAGAGCTTCTGCAGCAAACCGTAATGCTACTGAGAAGAAAGATG 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TCTTTGAGCCTCCTCTTAGAGCTTCTGCAGCAAACCGTAATGCTACTGAGAAGAAAGATG 1225
Query 1238 AACCTATGAAACTACTTGGACCATAGACGAGAAATCAAAGCTAAAActttttattacttt 1297
||||||||||||||||||||||||| |||||||||| ||||||||| ||||| | |||||
Sbjct 1226 AACCTATGAAACTACTTGGACCATAAACGAGAAATCGAAGCTAAAAGTTTTTGT-ACTTT 1284
Query 1298 tccttgtttttt 1309
||||||||||||
Sbjct 1285 TCCTTGTTTTTT 1296
Score = 158 bits (85), Expect = 1e-37
Identities = 128/146 (88%), Gaps = 14/146 (10%)
Strand=Plus/Plus
Query 1 AAGATTTTTAAGAATGTTGTAGTAGCTTCGCGAATAATCTC-AGGTC---T-T----CTA 51
||||||||| ||||||||||||||||||||||||||||||| ||||| | | | |
Sbjct 1 AAGATTTTTTAGAATGTTGTAGTAGCTTCGCGAATAATCTCAAGGTCTTTTATAAAACCA 60
Query 52 TAAAACCAAACTAGCGATTAGCCGACTCTTCCTCTTT-A-TTATTACAAAGACGAA-AAG 108
||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||
Sbjct 61 TAAAACCAAACTAGCGATTAGCCGACTCTTCCTCTTTTAATTATTACAAAGAC-AAGAAG 119
Query 109 GCTTC-GAGTTTTGTAATTTCTTCTT 133
| ||| || |||||||||||||||||
Sbjct 120 GTTTCCGACTTTTGTAATTTCTTCTT 145
> Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1
Length=1015
Score = 725 bits (392), Expect = 0.0
Identities = 813/1009 (81%), Gaps = 57/1009 (6%)
Strand=Plus/Plus
Query 167 CTTCAATGGCGAAAGACGGACCTAATTGGGATGGTTTGCTTAAGTGGAGTCTCTCTCACG 226
||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||||
Sbjct 7 CTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAATGGAGCCTCTCTCACT 66
Query 227 CCGACGGTACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGGAGG 286
|||| ||||||||||| |||||||| || |||||||| ||||||||||||||| ||||
Sbjct 67 CCGATGGTACTCGACCTACTCGCCATTTAAGTGAGGAAGATCGAAAATGGTTTGCAGAGG 126
Query 287 CTATGCAATCGCAGACTGTAGATGTAGTCAAACGCATGAAGGAGATTACACTAGTTA-TG 345
||||||| ||||| || |||||| ||||||| || |||||||||| |||| || || ||
Sbjct 127 CTATGCAGTCGCAAACAGTAGATATAGTCAAGCGGTTGAAGGAGATAACACAAG-TATTG 185
Query 346 CAAACACCTGAACAAGTTTTGGTGGAACATGGAGTAACACCTGAAGATATCCAAGATTTG 405
|| |||||| |||||||||||| || || |||||| ||| ||||||| ||| ||||
Sbjct 186 CAGACACCTCAACAAGTTTTGGAGGCTCACCAAGTAACCCCTAAAGATATTGAAGGTTTG 245
Query 406 CTGGATGAGCTGCAAGAGCACGTTGAATCGATCGATATGGCTAACGATCTTCATTCAATT 465
||||||||| |||| || || |||||||| || || |||||||| ||||||||||| ||
Sbjct 246 CTGGATGAGTTGCAGGAACATGTTGAATCAATTGACATGGCTAATGATCTTCATTCCGTT 305
Query 466 GGAGGCTTGGTTCCTCTTCTTAGTTTCCTTAAAAACTCTC-ATGCTAATATTCGGGCAAA 524
||||||||||| ||||||||| | | ||| |||||||| | |||||||||||||||| |
Sbjct 306 GGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTC-CAATGCTAATATTCGGGC-TA 363
Query 525 AG-CTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCTAGAAGTCAGGAACT-TGTT 582
|| |||| |||||| | |||||||||||| ||||||| ||| | ||||| ||| | |||
Sbjct 364 AGTCTGCAGATGTCATAAGCACAATAGTTGAGAACAACCCTCGGAGTCAAGAA-TCAGTT 422
Query 583 ATGGAAACCAATGCTCTGGAGTCATTGCTCTCGAA-TTTCACTTCAGACACTGATATT-C 640
|||||| |||||| | | ||||||||||| ||||| ||| ||||||||||| ||| || |
Sbjct 423 ATGGAAGCCAATGGTTTAGAGTCATTGCTTTCGAACTTT-ACTTCAGACACCGAT-TTGC 480
Query 641 ACGCTCGAACCCAGGCTCTTGGCGCAATATCATCTTTGATTCGCCATAACAAA-CCAGGA 699
| ||||||| ||||| || || ||||||||||||||||||||| |||| ||| || |||
Sbjct 481 ATTCTCGAACACAGGCGCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCCGGGA 540
Query 700 GTAAC-GGCTTTCAAGCTTGCCAATGGTTA-TGCTGGCCTAAGAGACGCCTTGGCATCTG 757
| || || |||| || |||| |||||||| | |||| ||| ||| || |||| | |||
Sbjct 541 -TCACAGG-TTTCCAGATTGCAAATGGTTACT-CTGGTTTAAAAGATGCTTTGGAAGCTG 597
Query 758 ATAGTGTGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATG 817
||||||||||||||||||||||||| ||||||||| |||| ||||| || |||||| |||
Sbjct 598 ATAGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGCTGCATTATCTTCTACAAGAGAATG 657
Query 818 ATTCAGAC-C-GCAGTATTGCCACTGGA-CTTGGA-TTCCCCCGAGT-GATGATGCATCT 872
| |||||| | | | |||||| | | || || || ||| || | | ||||||||| ||
Sbjct 658 ACTCAGACTCCG-A-TATTGCTA-TAGAACTCGGGCTTCACC--ATTTGATGATGCACCT 712
Query 873 TGCCTCTAG-TGACGATGCTGA-GATCAGAGAAGCCGCTCTTCGTGGATTACTTGAGCTT 930
| ||||| | ||||||||| | | |||||||| |||||||| ||||| ||||||||
Sbjct 713 CGTGTCTAGCTT-CGATGCTGATG-TAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTC 770
Query 931 -TCAAGAG--AGAAAA-AC-GATGGAA---GTAG--C-AGCATAGATAAAAG-CGATGAG 978
| || || |||||| || | | | | || | | ||||||| | |||| |||||||
Sbjct 771 GTGAA-AGCTAGAAAAGACTG-TAGTACTTGTGGTTCTAGCATAG-TGAAAGGCGATGAG 827
Query 979 AAACTGAGGCAGCTACTAGAAGAACGGATCAAAGGAATCACCTTG---ATGTCACAAGAG 1035
| |||||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||||
Sbjct 828 AGACTGAGACAGATGCTAAAAGATCGGATCAAAGCAATCAGCTTGTTTATGTCACAAGAA 887
Query 1036 GATCT-TGAAACGGTTAAAGAAGAGAGACAGCTCGTGGATTTACTGTGGAGCAT-TTGCT 1093
||||| | | | | |||||| |||||||||||| | |||| ||| |||| || || ||
Sbjct 888 GATCTCTCAG-CTGCTAAAGAGGAGAGACAGCTCTTAGATTCACTATGGACCACATT-CT 945
Query 1094 ACAATGAACCTTCTTCTCTG-AGAGAAAAAGGACTTGTC-GTTCTTCCC 1140
|||| |||||||||||||| ||||| ||||| ||| || |||||||||
Sbjct 946 ACAACGAACCTTCTTCTCTTTAGAGAGAAAGG-CTTCTCTGTTCTTCCC 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5