BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09450.1 Length=2328 Score E Sequences producing significant alignments: (Bits) Value Ahg341087 jgi|Araly1|341087|fgenesh1_pg.C_scaffold_3000850 3552 0.0 > Ahg341087 jgi|Araly1|341087|fgenesh1_pg.C_scaffold_3000850 Length=2322 Score = 3552 bits (1923), Expect = 0.0 Identities = 2206/2340 (94%), Gaps = 30/2340 (1%) Strand=Plus/Plus Query 1 ATGCGCGACACAACATGGCTCGAGCGACTTGGCCTGGCTCTGCGAACCGCCATGGCTTGT 60 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCGCGACACAGCATGGCTCGAGCGACTTGGCCTGGCTCTGCGAACCGCCATGGCTTGT 60 Query 61 CTCATCGTGAGCTTAACCACTTTGTACGGTCCCAAACCACTAAGACACTTCACAACGTTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCATCGTGAGCTTAACCACTTTGTACGGTCCCAAACCACTAAGACACTTCACAACGTTT 120 Query 121 CCAGCCTTTTCTTACCTGACCACAATCTTGATCTGGCTCTCCGATGCTGAACCAACATAC 180 ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 121 CCAGCCTTTTCTTACTTGACCACAATCCTGATCTGGCTCTCTGATGCTGAACCAACATAC 180 Query 181 GGCGAAGTTCTCAAGTGCTGTCTTGATGTCTCTTACGCCACTTTTCAGACAATAGCCATT 240 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTGAAGTACTCAAGTGCTGTCTTGATGTCTCTTACGCCACTTTTCAGACAATAGCCATT 240 Query 241 GCGCTAGTGAGTGTCTTGGTGGTTGGACCAGCTTCACTAGGGAATGGCTTGGTGGCTCCA 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTGCTAGTGAGTGTCTTGGTGGTTGGACCAGCTTCACTAGGGAATGGCTTGGTGGCTCCA 300 Query 301 GTTGCTGTGGCTCTAGCTTCATTCATAGTGGCTTTCCCCGTGTCCACGAGTCTGCTGACT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTTGCTGTGGCTCTAGCTTCATTCATAGTGGCTTTCCCCGTGTCCACGAGTCTGCTGACT 360 Query 361 AAACGGATTGCCTTTGGGCAGATTGTTGTAGTCTACGTGACTTTTGTGGTGTTCAATGGA 420 ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 361 AAACGTATTGCCTTTGGGCAGATCGTTGTTGTCTACGTGACTTTTGTGGTGTTCAATGGA 420 Query 421 GAGGTGGCTCATGTATTCATGCTCCCGGTTCATGTGGCAGGCAGTACAGCACTTGGAGCC 480 |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 421 GAGGTGGCTCATGTTTTCATGCTCCCGGTTCATGTGGCGGGAAGTACAGCACTTGGAGCC 480 Query 481 ATTGCTTCACTCATCGCAGTGCTTCTCCCGTTTCCAAGGCTGGCTCATAGTCAGATGAGT 540 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTGCTTCTCTCATCGCAGTGCTTCTCCCGTTTCCAAGGCTGGCTCATAGTCAGATGAGT 540 Query 541 AAGGGTTGCAAATTATATGCTGAAAATGCTCTTGAGAGGTTGAATATGTTTGTGGAGATC 600 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 AAAGGTTGCAAATTATATGCTGAAAATGCTCTTGAGAGGTTGAATATGTTTGTCGAGATC 600 Query 601 ATGATGGCACGAGACAACACCACAGCTCAGGTTTTGATCGCACGGGCTGCTTCATTGTCT 660 |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 601 ATGATGGCTCGAGACAACACCACAGCTCAGGTTTTGCTAGCACGGGCTGCTTCATTGTCT 660 Query 661 GCAGCAGCTAAAAACACACTCAAGAACATCAAAATCCACCATGAGCGTATATCATGGGAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 661 GCAGCAGCTAAAAACACACTCAAGAACATCAAAATCCACCATGAGCGTATGGCATGGGAG 720 Query 721 AGACCAGATACAAGATTCTTGAGCAGGAAGCAGAAGTTGGATCCTGCAGAGAAACTGCAT 780 ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 721 CGACCAGATACAAGGTTCTTGAGAAGGAAGCAGAAGTTGGATCCTGGAGAGAAACTGCAT 780 Query 781 GCAACAGATTTTCTGTTGAGGGGATTGGAGCTGGCTTTGGGCTCTTGCAGTTCCTTTCCT 840 |||||||| |||||| |||||||| |||||||||| ||||| |||||||||||||||||| Sbjct 781 GCAACAGAATTTCTGATGAGGGGACTGGAGCTGGCATTGGGTTCTTGCAGTTCCTTTCCT 840 Query 841 CAAGGCATGAGCCGCGACGAACTGACTCGTCTTTTAGAAGGTCCCAGGACACATATTGCT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 CAAGGCATGAGCCGCGACGAACTGACTCGTCTTTTAGAAGGTCCCAGGACACAGATTGCT 900 Query 901 -CCACGGTCAGAATCTACTCTCAAGTCCCAAGATAGTCTAGGGTGGCATCATGAGGCTGA 959 ||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 901 TCCAAG-TCAGCATCTACTCTCAAGTCCCAAGATAGTCTAGGGTGGCATCTTGAGGCTGG 959 Query 960 GTCTCTGTCTACTGCAGCTTTACCGGTTTGCTTCTTCCGGTACTGCGTAGAACTCTTCAG 1019 ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| Sbjct 960 GTCTCTGTCTACTGCAGCTTTACCGGTTTGCTTCTTCAGATATTGCGTAGAACTCTTCAG 1019 Query 1020 AGGTGATTTCTTATCTTTGAGACAAGACAGTAAATCCGTAAATGGAAGGACCACGGAGGA 1079 || ||||||||||||||||||||||||||||| |||||||||| |||| | ||| ||||| Sbjct 1020 AGATGATTTCTTATCTTTGAGACAAGACAGTATATCCGTAAATAGAAGTAACACAGAGGA 1079 Query 1080 AGAAATTCATCCAGCAAA-CGAAGGGTTGTCCATGGCCAGAAAGTTTTGGGACATTCTCT 1138 ||||||||| |||| || |||||| |||||||||||||||||| ||||||||||||| | Sbjct 1080 AGAAATTCACCCAG-AACTCGAAGGATTGTCCATGGCCAGAAAGGTTTGGGACATTCTAT 1138 Query 1139 GTGTCTGGATGGCCAGAGAAAGGTTTGTTTTTGCATTCAAGTGCTCAATTTCTCTTGGCC 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1139 GTGTCTGGATGGCCAGAGAAAGGTTTGTTTTTGCATTCAAGTGCTCAATTTCCCTAGGCC 1198 Query 1199 TTGCGGTGCTGTTTGGTATACTGTATAATAAAAATAACGGGTATTGGTCGGGTCTAACTG 1258 | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1199 TCGCGGTGCTGTTTGGTATAATGTATAATAAAAAGAACGGGTATTGGTCGGGTCTAACTG 1258 Query 1259 TAGCCATTAGCCTTGTAAGCGGTAGGCAAGCAACACTAACAGTAGCAAATTCTCGTCTAC 1318 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1259 TAGCCATTAGCCTTGTAAGCGGTAGGCAAGCAACATTAACAGTAGCAAATTCTCGTCTAC 1318 Query 1319 AAGGGACAGCCATGGGATCAGTCTACGGTCTAATATGTTGTTCTGTTTTCCAAAGACTAG 1378 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 AAGGGACAGCGATGGGATCAGTCTACGGTCTAATATGTTGTTCTGTTTTCCAAAGACTAG 1378 Query 1379 AAGAATTCAGGTTCTTACCTCTTCTCCCTTGGATAATCCTCGCCGTCTTCATGAGGCACA 1438 |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||| Sbjct 1379 AAGAATTCAGGTTCTTACCTCTGCTCCCTTGGATAATCTTGGCTGTCTTCATGAGGCACA 1438 Query 1439 GCAAAGTCTATGGCCAGCCTGGAGGAGTTACGGCTGCAATTGCTGCACTGTTGATACTTG 1498 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1439 GCAAAGTCTATGGCCAGCCTGGAGGAGTTACAGCTGCAATTGCTGCACTGTTGATACTTG 1498 Query 1499 GGAGGAGAAATTATGGAGCTCCAACTGAATTTGCAATCGCTCGCATCGTTGAAGCTTCGA 1558 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1499 GAAGGAGAAATTATGGAGCTCCAACTGAATTTGCAATCGCTCGCATCGTTGAAGCTTCAA 1558 Query 1559 TCGGGTTGCTCTGTTTTGTCTTCGGGGAGATTCTTGTCACCCCTGCGAGAGCAGCAACGC 1618 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1559 TTGGGTTGCTCTGTTTTGTCTTCGGGGAGATTCTTGTCACCCCTGCGAGAGCAGCAACTC 1618 Query 1619 TTGCAAGAACCGAAATTTCACACTGTCTCGATGCCCTCTTAGATTGCATCCAATCACTCG 1678 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1619 TTGCAAGAACCGAACTTTCACACTGTCTCGACGCCCTCTTAGATTGCATCCAATCACTGG 1678 Query 1679 TTCTTTGTTCTGAGCAGAAGAACCAGAAA--GT--G-G-TTGCAGATTTGAGAAAAAGTC 1732 ||||||||||||||||||||||||||||| || | | ||||||||||||||| ||| | Sbjct 1679 TTCTTTGTTCTGAGCAGAAGAACCAGAAAACGTCAGTGGTTGCAGATTTGAGAACAAGGC 1738 Query 1733 AGGTAAAACTCAAATCTCATGTTGAAGCATTAGAGAGGTTTGCAGCAGAAGCCTTAACAG 1792 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1739 AGGCAAAACTCAAATCTCATGTTGAAGCATTAGAGAGGTTTACAGCAGAAGCCTTAACAG 1798 Query 1793 AGCCTAAGATTCCGTTCCTCCG-CCGGCTCAACACGGACAGTTACAACAGGCTTTTGGGC 1851 |||||||||||||||||||| | || |||||||| | ||||||||||| |||||||||| Sbjct 1799 AGCCTAAGATTCCGTTCCTCTGTCCA-CTCAACACAGTCAGTTACAACAAGCTTTTGGGC 1857 Query 1852 TCTTTCTCGAAGATATCTGATCTTTGTCTCTATGTTTGTGATGGCCTCAAAAATCTATCT 1911 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1858 TCTTTCTCGAAGATATCTGACCTTTGTCTGTATGTTTGTGATGGCCTCAAAAATCTATCT 1917 Query 1912 GGAGTTCAACCAACACTTGCATTTCCTTGGGACAACATCACTCATGAGCTTAGAGCCTTC 1971 |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| Sbjct 1918 AGAGTTCAACCAACACTAGGATTTCCTTGGGACAACATCACTCATGAGCTAAGAGCCTTT 1977 Query 1972 CAAGAAAAGCTTCACCCTTCGGTGAAATGCTTAAAAGAGATTTCTCAAACCAAGTCTCAA 2031 ||||||||||||||||| ||||||||||||| ||| || ||||||||||| Sbjct 1978 CAAGAAAAGCTTCACCCATCGGTGAAATGCTC--------TTT---AA-CCAAGTCTCAA 2025 Query 2032 GCAAGACTCCAAAAGGAGTTGCAGAAGAGAAAGATCTGCCATGATGTTGAAGCAGGAACA 2091 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2026 GCAAGACTCCAAAAGGAGTTGCAGAAGAGAAAGATCTGCCATGATGTTGAAGCAGGAACA 2085 Query 2092 ACATCAAACGACAACTACTCATACATGGAGCTGGGTCCAAGCCAGGCTGATGTGGAGAGG 2151 ||||| || || ||||||||| |||||||| |||||||| |||||| ||||| |||||| Sbjct 2086 ACATCCAATGAAAACTACTCAAACATGGAGTTGGGTCCATGCCAGGATGATGCAGAGAGG 2145 Query 2152 TTTTCGGTTTCTTTCGTCATGCTACTGAAGGAAGCAACAGACAAGATAAGTTG-TAACAC 2210 ||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||| Sbjct 2146 TTTTCGGTTTCTTTCGTAATGCTACTGAAGGAAGCAACTGACAAGATAAGT-GATAACAC 2204 Query 2211 AGCAGACGATGCGTTC--AAGAGTGAAACTGCCCTATGTCTGAGCAGTCTAGGGTTCTGC 2268 ||| || || | |||| |||||||||||||| |||||| |||||||||||||||| ||| Sbjct 2205 AGCTGAAGA-G-GTTCTCAAGAGTGAAACTGCTCTATGTTTGAGCAGTCTAGGGTTTTGC 2262 Query 2269 ATTAGCAGATTAATGCAGGAAACAATATGTATTATGACAGAAATAACCCATACAACTTGA 2328 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2263 ATTAGCAGATTGATGCAAGAAACAATATGTATTATGACAGAAATAACCCATACAACTTGA 2322 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87683743990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5