BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09520.1 Length=1887 Score E Sequences producing significant alignments: (Bits) Value Ahg928623 jgi|Araly1|928623|scaffold_301080.1 2865 0.0 > Ahg928623 jgi|Araly1|928623|scaffold_301080.1 Length=1928 Score = 2865 bits (1551), Expect = 0.0 Identities = 1778/1890 (94%), Gaps = 6/1890 (0%) Strand=Plus/Plus Query 1 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTGGCCACAACGCCGTCCAAGTAT 60 |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| || Sbjct 22 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTCGCGACAACGCCGTCGAAGCAT 81 Query 61 CCACCTCCTCCTCCTCTTACGTTAACCCCTCGCCAGAGTTTGGAATCGGCGGCTATCTAT 120 ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 82 CCACCACCTCCTCCTCTTACGTTAACGCCTCGCCAGAGTTTGGAATCCGCGGCAATCTAT 141 Query 121 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 201 Query 181 GCTAAAGTTACTTGTATGTTCTACGAGAACAAACCTGAAGCCATGATGTTCATCGAACGT 240 || |||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 202 GCAAAAGTTACTTCTATGTTCTACGAGAACAAACAAGAAGCCATGGTGTTCATCGAACGA 261 Query 241 GTGAAGGATCTTCAGAAGACGATGGACGTACTCGTGAGTGAGGATCCAAACTCTGAGAGA 300 |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| Sbjct 262 GTGAAGGATCTTCAGAAGACTATGGACGTACTGGTGAGTGAAGATCCAAACTCGGAGAGG 321 Query 301 CTCTTGAGATCGCATAAGCTTATGCAAATCGCTATGAAGAGGTTGCAAAAAGAGTTTTAC 360 ||||||||| | ||||| |||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 322 CTCTTGAGAGCACATAAACTTATGCAGATCGCTATGAAGAGGTTACAAAAGGAGTTTTAC 381 Query 361 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTGTCCACTCGATCTTCA 420 |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| Sbjct 382 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTCTCTACTCGTTCTTCA 441 Query 421 CTTACTTCCGCAAGATCTAGCTACTCAGATTTCCCCGACTATGTCGAAGATCTAGATACG 480 |||||||| || |||||||||||||| ||||||||||| |||| |||||||||||||| Sbjct 442 CTTACTTCAGCGAGATCTAGCTACTCCGATTTCCCCGAAGATGTTGAAGATCTAGATACA 501 Query 481 ATCATCGAACTGGAGGAGGTTTCTACCAACGTCATGACGGATTTGAAATCCATCGCTGAG 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 502 ATCATCGAACTGGAGGAGGTTTCTAGCAACGTCATGACGGATTTGAAATCCATCGCTGAG 561 Query 541 TGCATGATCGGTTCTGGTTACGCTAAGGAGTGTCTAAGCATCTATAAAAGCATTAGGAAA 600 |||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||| Sbjct 562 TGCATGATTGGTTCTGGTTATGCTAAGGAGTGTTTAAGCATATATAAAAGCATTA-GAAA 620 Query 601 -TCGATCATCGACGAAGGGATTTATCGTTTAGAAGTGGAGAAGACGAGTACTGGGAAGGT 659 ||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 621 GTCGATAATCGACGAAGGGATCTATCGTTTAGAAGTCGAGAAGACGAGTACGGGGAAGGT 680 Query 660 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 740 Query 720 AGTTTCTATGGAGACTCTTTTCAAAGGTGAGAAGATTTTGTGTGATCATGTCTTTGAATC 779 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 741 AGTTTCCATGGAGACTCTTTTCAAAGGCGAGAAGATTTTGTGTGACCATGTCTTTGAATC 800 Query 780 CTCTGACGCAATTAGAGAGTCTTGCTTTAGTGATATCTCTCGAGACGGTGCGCTTCTTCT 839 |||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||| Sbjct 801 CTCTGATGCAATTAGAGAGTCTTGCTTTAGTGCTATCTCTCGTGATGGTGCGCTTCTTCT 860 Query 840 CTTTGGATTCCCGGAGATCATTAATACTAAAACTAGCAAGAAACACTCTCCGCCGGAGAA 899 |||||||||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||| Sbjct 861 CTTTGGATTCCCAGAGATCATTGCTACCAAAACTAGCAAGAAAAACTCGCCGCCGGAGAA 920 Query 900 AGTTTTCCGGCTGCTTGACATGTACACCGCCATCGCCGGAAACTGGCAAGCGATTGAGTC 959 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 921 AGTTTTCCGGCTGCTTGACATGTATACTGCCATCGCCGGAAACTGGCAAGCGATTGAATC 980 Query 960 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTTGCTCTTAAATCTCTAATCTC 1019 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 981 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTAGCACTTAAATCTCTAATCTC 1040 Query 1020 TCTCAGCGAATCAATTCGATCACTACTTGTGGAATTCGAATCCGGAATCCAGAAGGACTC 1079 |||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || || Sbjct 1041 TCTCAGTGAATCGATTCGATCACTACTGGTGGAATTCGAATCCGGAATTCAGAACGATTC 1100 Query 1080 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1101 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1160 Query 1140 CCTCTCTCTCCTCGCTGACTACAGCAACGTACTAGTCGATATCCTCGCCGGATCTCCACC 1199 |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 1161 TCTCTCTCTCCTCGCTGACTACAGCAACGTACTCGTTGATATCCTCGCCGGGTCTCCACC 1220 Query 1200 ACCGGACAGGTCGCTGTTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1259 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 ACCGGACAGATCGCTGCTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1280 Query 1260 TTCGTCGGAGCTGACGATCCGTTTCGCTTGGATCATCCTCGTCCTCCTTTGTAAAATCGA 1319 ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 1281 TTCGTCGGAGCTGACGATCAGATTCGCTTGGCTCATCCTCGTCCTCCTTTGTAAAATCGA 1340 Query 1320 TCGTAAATCAATTCACTACAAAGACTTCTCTATACAGTATCTCTTCCTCACCAACAATCT 1379 |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct 1341 TCGTAAATCAATTCACTACAAAGATTTCTCTGTACAGTATCTCTTCCTCACCAACAACCT 1400 Query 1380 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGCGAGGATTG 1439 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1401 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGGGAGGATTG 1460 Query 1440 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGCAGCTATAAGCGGCTAGCTTG 1499 ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 1461 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGGAGCTATAAGCGACTGGCTTG 1520 Query 1500 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAGGAAGT 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1521 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAAGAAGT 1580 Query 1560 GAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTATAG-TAAGCACAGTG 1618 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 1581 CAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTAC-GCTAAACACAGTG 1639 Query 1619 TCTGCGTCGTAGCTGATCCAAATATACGAGACGAGATCAAAGTATCGATATCGAGAAAGC 1678 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1640 TCTGCGTCGTAGCTGATCCAAATCTACGAGACGAGATCAAAGTATCGATAGCGAGAAAGC 1699 Query 1679 TGGTGCCGATCTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGG-GAGAAGGC 1737 |||||||||| |||||||||||||||||||||||||||||||||||||||| | || | | Sbjct 1700 TGGTGCCGATTTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGGCGGGA-GCC 1758 Query 1738 GATGGCGCGAGAAACCTGAACTCAGTTGTCCGATTTACCCCTGAAGATATTGAAAACTAT 1797 | |||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1759 GGTGGCGCCAGAAACTTGAGCTCAGTTGTCCGATTTACCCCTGAGGATATTGAAAACTAT 1818 Query 1798 TTGTCTGATTTGTTCAGAGAGAAGGGTAGTTCGGGGAATTCGTCAGCCTCTTCTCCTTCC 1857 ||||||||| |||||| |||||||||| ||||||||||||| || || |||||||||||| Sbjct 1819 TTGTCTGATATGTTCACAGAGAAGGGTGGTTCGGGGAATTCATCTGCATCTTCTCCTTCC 1878 Query 1858 TCTTGTCGGTCAAGGCAATCCATGTCCTAA 1887 ||||||||||| ||||||||||||||||| Sbjct 1879 TCTTGTCGGTCTGGGCAATCCATGTCCTAA 1908 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70885945945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5