BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09540.1 Length=1496 Score E Sequences producing significant alignments: (Bits) Value Ahg478272 jgi|Araly1|478272|fgenesh2_kg.3__973__AT3G09540.1 1868 0.0 > Ahg478272 jgi|Araly1|478272|fgenesh2_kg.3__973__AT3G09540.1 Length=1426 Score = 1868 bits (1011), Expect = 0.0 Identities = 1276/1396 (91%), Gaps = 49/1396 (4%) Strand=Plus/Plus Query 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATACAAAAACTGAAACTGTCCGAAA 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATAC-AAAACTGAAACTGTCCGAAA 59 Query 61 TTGAATTCAACATTTGTTATATAAATTAGATATGGGAAACTTACATGGCATTCACAGATC 120 || ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| Sbjct 60 TTAAATTCAACATTTG-T-TATAAATTAGATATGGGAAACTTACATGGCCTTCACAGATC 117 Query 121 CCATCACGGCGGTTCTAATTTTCCCGGCGAA-GCTCCCAATTCACCTTTCCCACCACCAT 179 ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 118 CCATCACGGCGGTTCTAATTTTCCCGGCGAATCCT-CCAATTCACCTTTCCCACCACCAT 176 Query 180 ATACAGCCGCTCCAGCTCCAGCTCCAGCTCCGTCATCGCCATCCGATCACCACATGACAG 239 || | || | ||||||| | | ||| | ||||||||||||| | | Sbjct 177 AT--A-------CA--T-CAGCTCC-G---C--CAT-----T-CGATCACCACATGGCGG 212 Query 240 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCCGGAAAGGCCGAAGGTT 299 ||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| Sbjct 213 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCTGGTAAGGCTGAGGGTT 272 Query 300 TCGGCCGCGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 359 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TTGGCCGTGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 332 Query 360 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCTTTATGGATCGTGT 419 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 333 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCGTTATGGATTGTGT 392 Query 420 TCGATGTATCGGGAACGATCAATCTGTCTTCGTTTGTCAACGTATCATCGCACACAACGG 479 ||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct 393 TCGATGTGTCGGGAACGATCAATCTCTCTTCGTTTGTGAGCGTATCATCGCACACAACGG 452 Query 480 TGGACGGGAGAGGACAAAAAGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 539 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 453 TGGACGGAAGAGGACAAAAGGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 512 Query 540 AAAACGTTATAATCTGCAATCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCTA 599 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 513 AAAACGTTATAATCTGCAACCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCCA 572 Query 600 TTCAGATCAAACCAAAATCGCACAATATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 659 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 573 TTCAGATCAAACCAAAATCACACAACATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 632 Query 660 ATGATGGTTTGATTGATATCACACGAGAAAGCACTGACATCACTGTCTCAAGATGCCATT 719 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 633 ATGATGGTTTGATCGATATCACACGAGAAAGCACTGACATTACTGTCTCAAGATGCCATT 692 Query 720 TCATGAACCACAACAAAACTATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 779 |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 693 TCATAAACCACAACAAGACGATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 752 Query 780 GCATAAGAGTTACGATACATCACTGCTTCTTCGACGGTACACGTCAGCGACACCCTCGCG 839 ||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| Sbjct 753 GCATAAGAGTTACGATACATCACTGTTTTTTTGACGGTACACGTCAGCGACACCCTCGCG 812 Query 840 TTCGCTTCGCAAAAGTCCATCTCTTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 899 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 813 TTCGCTTTGCAAAAGTCCATCTATTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 872 Query 900 TTGGTGCTGGTGTCGAATCTCAGATACATTCTCAGTGCAACATATATGAAGCTGGTGAAA 959 | ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||| | Sbjct 873 TCGGTGCCGGTGTAGAATCTCAGATATATTCTCAGTGCAACATATATGAAGCTAGTGAGA 932 Query 960 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCCGCTGATAAAGAGAAACCCGGAGCTG 1019 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 933 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCGGCAGATAAAGAGAAACCCGGAGCTG 992 Query 1020 GATTCGTAAGATCAGAAGGGGATTTGTTGTTGAACGGAGCCAAATCGTGTCTTAGTCAGG 1079 ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 993 GATTCGTAAGATCCGAAGGGGATTTGTTTTTGAACGGAGCCAAGTCGTGTCTTAGCCAGG 1052 Query 1080 GCGGAGAGCGCTATGTGTTCTCTCCAATCCAACACTATTCTGAATGGACCGTCGAATCTC 1139 ||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| | Sbjct 1053 GCGGAGAACGCTATGTGTTCTCTCCGACCCAACACTATTCTGAGTGGACCGTCGAATCGC 1112 Query 1140 CAACCGATATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCAGAACCTTCCCCTCC 1199 ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||| Sbjct 1113 CAACCGAGATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCTGAACATTCCGCTCC 1172 Query 1200 CACTAGACCGGCCTCCGACCACCGCATAACTATTGCTTAGCG-AAGTGAATTGATTGGAT 1258 ||||||||| |||||||| |||| ||||||||| ||| | ||||||||| | ||||| Sbjct 1173 CACTAGACCAACCTCCGACAACCGGTTAACTATTG-TTAATGGAAGTGAATTAAATGGAT 1231 Query 1259 CACTTTTGGCACTACCAAAACTATATTGCAGTAGTTTCTTCCATTTCCACTTAGACAAAC 1318 ||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||||| Sbjct 1232 CACTTTTGGCAGTACCAAAATTATATCCCAGTAGTTTCTCCCGCTTCCACTTAGACAAAC 1291 Query 1319 AAAATGATATATCAAATTTGATAGGATTGTCGAATTTTTCCAATTCAAAGTTGAGATATT 1378 ||| | | | | |||||||||||||||||||||||||||||||| || Sbjct 1292 AAA-T-A------------G---G-ATTGTCGAATTTTTCCAATTCAAAGTTGAGATTTT 1333 Query 1379 AGTTTCAACTAATAAA 1394 |||||||||||||||| Sbjct 1334 AGTTTCAACTAATAAA 1349 Score = 80.5 bits (43), Expect = 3e-14 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1420 GTTATTGTGTATTTTGAGC-T-TGTTTGTATGTATGAATTATCTCCAACTAGATGAATAA 1477 |||| ||| |||||||||| | ||| | ||||||| ||||||| || ||||||||||| Sbjct 1350 GTTAATGTATATTTTGAGCTTATGTGCGCATGTATGGATTATCTTTAATTAGATGAATAA 1409 Query 1478 CAAGTCTGTGGTGGTTG 1494 ||||||||||||||||| Sbjct 1410 CAAGTCTGTGGTGGTTG 1426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55992660150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5