BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09600.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1 2080 0.0
Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163 237 2e-61
> Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1
Length=1341
Score = 2080 bits (1126), Expect = 0.0
Identities = 1278/1350 (95%), Gaps = 15/1350 (1%)
Strand=Plus/Plus
Query 38 ATCTGAAAAATAACCGATGAGCTCGTCGCCGTCAAGAAATCCAACGAACGCCGAAGCACC 97
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 1 ATCTGAAACATAACCGATGAGCTCGTCGCCGTCAAGGAATCCGACGAACGCCGAAGTACC 60
Query 98 TCCGCCACCACCAACATCGACGGATGCTGTGGCAGAGGGTTCGTCTAAGAAAGTGAGGAA 157
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCCGCCACCACCAACATCGACGGATGCGGTGGCAGAGGGTTCGTCTAAGAAAGTGAGGAA 120
Query 158 ACCATATACCATCACCAAGTCAAGAGAGAGCTGGACAGAGGAAGAGCACGATAAGTTTCT 217
||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 121 ACCTTATACCATCACCAAGTCTAGGGAAAGCTGGACAGAGGAAGAGCATGATAAGTTTCT 180
Query 218 TGAAGCACTTCAACTGTTTGATCGTGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAA 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TGAAGCACTTCAACTGTTTGATCGAGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAA 240
Query 278 GACTGTGATTCAGATAAGGAGTCATGCTCAAAAATACTTTCTCAAGGTTCAGAAAAACGG 337
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 241 GACTGTGATTCAGATAAGGAGTCACGCCCAAAAATACTTTCTAAAGGTTCAGAAAAACGG 300
Query 338 GACATTAGCTCATGTGCCACCTCCTCGACCTAAGCGCAAAGCAGCTCATCCGTATCCTCA 397
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GACATTAGCACATGTGCCACCTCCTCGGCCTAAGCGCAAAGCAGCTCATCCGTATCCTCA 360
Query 398 AAAGGCATCAAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTACGCG 457
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAAGGCATCGAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTTCGCG 420
Query 458 AAATGGCGACATGCCGGGATATGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGT 517
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATAGCGACATGCCGGGATTTGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGT 480
Query 518 TATTTCACCACAACATGAACTTGCTACTCTTCGTGGAGCAGAAGCTGATATTGGATCAAA 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATTTCACCACAACATGAACTTGCTACTCTTCGTGGAGCAGAAGCTGATATTGGATCAAA 540
Query 578 GGGCTTATTAAATGTTAGTAGCCCTTCTACATCTGGCATGGGAAGCTCAAGCCGAACAGT 637
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 541 GGGCTTATTAAATGTTAGTAGCCCTTCTACATCTTGTATGGGAAGCTCAAGCCGAACAGT 600
Query 638 ATCAGGTTCTGAGATTGTAAGAAAGGCTAAACAGCCTCCAGTGCTTCACGGTGTTCCTGA 697
|||||||||||||||||||| |||||| ||||||| ||| || |||||||||||||||||
Sbjct 601 ATCAGGTTCTGAGATTGTAAAAAAGGCGAAACAGCTTCCCGTTCTTCACGGTGTTCCTGA 660
Query 698 TTTTGCTGAAGTTTATAATTTCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCATGT 757
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 TTTTGCTGAAGTTTATAACTTCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCACGT 720
Query 758 GGAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTTCTGTTATTGATGAGAAA 817
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 GGAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTTCTGTTATTGATGAGAAA 780
Query 818 CCTCACAGTTAACTTATCAAACCCTGATTTAGAATCCACTAGGAAAGTCCTCTTATCATA 877
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 781 CCTCACAGTTAACTTATCAAACCCTGATTTAGAATCCGCTAGGAAAGTCCTCTCATCATA 840
Query 878 TGACAACGTGACGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGA 937
|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TG-C--CGTGAAGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGA 897
Query 938 CAAATCAGCATAACAAAAATATGAGCCATCAGCTAGCAAGTTTACTCATTGGTTTCCCAT 997
||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||| ||||
Sbjct 898 CAAATCAGCTTAACAAAAATATCAGCCATTAGCTATCAAGTTTACTCATCGGTTTTCCAT 957
Query 998 GTTTAATAAACTTTGGTGTTATACGTCACTGG-AATCACAATCGTGTCACTGCATCATCA 1056
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 958 GTTTAATAAACTTTGGTGTTATACGTCACTGGGAATCACAATCTTGTCAATGCATCATCA 1017
Query 1057 TGTGGGAATTGTGTAAAAGGTCTTTGTTGTTTTGAGGAGAAACATAAGCCAAGTTTT-GA 1115
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1018 TGTGGGAATTGTGTAAAAGGTCTTTGTTGTTTTGAGGAGAAACGTAAGCCAAGTTTTCGA 1077
Query 1116 AGCTATAGGGGGCTTCCGCAGATTTTGACCAGGACTAGTTGGGTGAATGGTAGGTATAAT 1175
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 -GCTATAGGGGACTTCCGCAGATTTTGACCAGGACTAGTTGGGTGAATGGTAGGTATAAT 1136
Query 1176 ATATGTAAGGGGTTTTTCTACTAGTTGCAAGACAGCCTCATTCTCATCCACCCGTTACTC 1235
|||||||||||||||| ||||||||||| |||||||||| ||||||||| || |||||||
Sbjct 1137 ATATGTAAGGGGTTTT-CTACTAGTTGCTAGACAGCCTCTTTCTCATCCGCCGGTTACTC 1195
Query 1236 TTGTACTAAA-ATCTCGTCATAACTTTTTGTTCAGTTGTTGTGTATTTGTGTAAAAGAT- 1293
|||||| ||| ||||| ||||| |||||||||||||||||||||| |||| || |||
Sbjct 1196 TTGTAC-AAACATCTCTTCATAT-TTTTTGTTCAGTTGTTGTGTAT--GTGTCAAGGATT 1251
Query 1294 AAGTCCTAGGACTGAGTGTAATGGTTCAAGATCAGTGTTAAGTAA-ATGACGGCAACTCT 1352
|| |||||||||||| ||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1252 AAATCCTAGGACTGATTGTAATGGTTCAAGATCAGTGTTAAGTTATATAACGGCAACTCT 1311
Query 1353 A-TTGTTTTAAAGTTGACAGCTTTCTTTAT 1381
| ||||||| |||||||||||||||| |||
Sbjct 1312 AATTGTTTTGAAGTTGACAGCTTTCTCTAT 1341
> Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163
Length=930
Score = 237 bits (128), Expect = 2e-61
Identities = 240/292 (82%), Gaps = 16/292 (5%)
Strand=Plus/Plus
Query 568 TTGGATCAAAGGGC-TTATTAAATGTTAGTAGCCCTTCTA-CATCTGGCATGGGAAGCTC 625
|||||||||| ||| | | ||| || | ||| ||||| | ||||||| || ||||||||
Sbjct 590 TTGGATCAAATGGCATGA-TAAGTGAAACTAGTCCTTC-AGCATCTGGTATTGGAAGCTC 647
Query 626 AAGCCGAACAGTATCAGGTTCTGA-GATTGTAAGAAAGGCT-AAAC-AGCCTCCAGTGC- 681
|||| ||||| |||||| |||| | | || ||||| || | |||| || |||| | |
Sbjct 648 AAGCAGAACACTATCAGATTCTAAGGGTT-TAAGAGTGG-TGAAACAAG-CTCC-CT-CA 702
Query 682 -TTCACGGTGTTCCTGATTTTGCTGAAGTTTATAATTTCATTGGGAGTGTCTTTGATCCT 740
| || ||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 703 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCT 762
Query 741 GA-AACGAGAGGCCATGTGGAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGT 799
|| | | | ||||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 763 GACAGC-AAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGT 821
Query 800 TCTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAACCCTGATTTAGAA 851
|||| | |||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 822 TCTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5