BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09640.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478284 jgi|Araly1|478284|fgenesh2_kg.3__985__AT3G09640.2 1243 0.0
> Ahg478284 jgi|Araly1|478284|fgenesh2_kg.3__985__AT3G09640.2
Length=892
Score = 1243 bits (673), Expect = 0.0
Identities = 782/834 (94%), Gaps = 9/834 (1%)
Strand=Plus/Plus
Query 142 aaaaaTGGTGAAGAAGAGTTACCCGGAAGTGAAAGAAGAGTACAAGAAAGCTGTTCAGAG 201
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGGTGAATAAGAGTTACCCGGAAGTGAAAGAAGAGTACAAGAAAGCTGTTCAGAG 60
Query 202 ATGCAAGAGGAAGCTCCGTGGTCTTATTGCCGAGAAGCACTGTGCTCCCATCGTCCTCCG 261
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 61 ATGCAAGAGGAAGCTCCGTGGTCTTATCGCCGAGAAGCACTGTGCTCCTATCGTTCTCCG 120
Query 262 TCTTGCATGGCACTCGGCTGGGACATTTGATGTGAAGACGAAGACAGGAGGACCGTTTGG 321
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCTTGCATGGCACTCTGCTGGGACATTTGACGTGAAGACGAAGACAGGAGGACCGTTTGG 180
Query 322 GACGATAAGGCATCCCCAAGAGCTAGCCCATGATGCCAACAATGGTCTTGATATTGCCGT 381
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 181 AACGATAAGGCATCCCCAAGAGCTAGCCCATGAGGCCAACAATGGTCTTGATATAGCAAT 240
Query 382 TAGGCTTCTTGACCCTATCAAGGAGCTGTTCCCTATTCTGTCATATGCTGACTTCTACCA 441
|||||||||||| || ||||||||| ||||||| |||||||| |||||||| ||||||||
Sbjct 241 TAGGCTTCTTGAGCCGATCAAGGAGTTGTTCCCCATTCTGTCTTATGCTGATTTCTACCA 300
Query 442 GCTAGCTGGAGTAGTTGCTGTTGAGATCACTGGAGGACCAGAGATTCCATTTCATCCTGG 501
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GCTAGCTGGAGTTGTTGCTGTTGAGATCACTGGAGGACCCGAGATTCCATTTCATCCTGG 360
Query 502 TAGACTGGACAAAGTTGAGCCACCTCCTGAAGGTCGTCTGCCTCAGGCCACCAAAGGTGT 561
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TAGACTGGACAAAATTGAGCCACCTCCTGAAGGTCGTCTGCCTCAGGCCACCAAAGGCGT 420
Query 562 GGATCATCTAAGAGATGTGTTTGGTCGGATGGGACTCAATGACAAAGATATCGTTGCATT 621
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGATCATCTAAGAGATGTGTTTAGTCGGATGGGACTCAATGACAAAGATATTGTTGCATT 480
Query 622 GTCTGGTGGACACACCTTGGGTCGGTGCCACAAGGAGCGTTCAGGATTCGAGGGTGCATG 681
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 481 GTCTGGTGGACACACCTTGGGTCGGTGCCACAAGGAGCGCTCAGGATTCGAGGGAGCATG 540
Query 682 GACACCAAACCCGCTCATTTTTGACAACTCCTATTTCAAAGAGATACTAAGCGGAGAGAA 741
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACACAAAACCCGCTCATTTTCGACAACTCCTATTTCAAAGAGATACTAAGCGGAGAGAA 600
Query 742 AGAAGGACTTCTTCAACTACCAACCGACAAGGCTCTTCTTGATGATCCTCTCTTTC-TCC 800
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct 601 AGAAGGACTTCTTCAATTACCAACCGACAAGGCTCTTCTCGATGATCCTCTCTTTCGTCC 660
Query 801 CATTTGTTGAAAAATATGCTGCAGATGAGGATGCCTTCTTCGAAGACTATACGGAAGCTC 860
| |||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 661 C-TTTGTTGAGAGATATGCGGCAGATGAGGATGCCTTCTTCGAAGACTATAAAGAAGCTC 719
Query 861 ATCTAAAGTTGTCAGAACTCGGGTTTGCTGACAAGGAGTAATCTGGAATCTGGTGTCATC 920
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 720 ATCTGAAGTTGTCAGAACTCGGGTTTGCTGACAAGGAGTAATATGGAATCTGGTGCCAGG 779
Query 921 TCCTA-CC-TCC--TT-GATTCTTGTTCCCTCACATTAT--TATTGTAATCATA 967
||||| || | || |||||||||||| ||||||||| | |||||||||||
Sbjct 780 TCCTATCCCTTGAATTTGATTCTTGTTCCTTCACATTATCGTGTTGTAATCATA 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5